Materials and Reagents

1. Materials
   Note: All material and reagents used for the explant cultures must be sterile. Tools used for explant culture are autoclaved.
   1. 26 G ½ Needle (TERUMO, Dutscher, catalog number: 50101)
   2. 1.5 ml Eppendorf tube
   3. 4 well plates (to store tissue during explants preparation); un-treated 4-well IVF Dish (Thermo Fisher Scientific, Nunc^TM, catalog number: 179830)
   4. 10 cm diameter plastic Petri dish (to collect embryos)
   5. 6 (to 10) cm diameter Glass Petri dishes (2 units–for epithelium dissection and explant cutting)
   6. 50 mm diameter IBIDI video dishes u-Dish 50 mm, low ibiTreat: Ø 50 mm, low wall (3 ml volume), #1.5 polymer coverslip, tissue culture treated, sterilized (Biovalley, catalog number: 81136)
   7. Sterile pipette tips 
   8. 10 ml pipettes
   9. Sterile 15 ml and 50 ml tubes (Falcon, Dutscher, catalog numbers: 352096; 352070)
   10. 0.2 µm filters + 20 ml syringes to filter the media
   11. Borosilicate glass capillaries GC100-15 (Harvard apparatus Ltd., Kent, UK)
       
       
       
2. Animals
   Embryonic day 13.5 (E13.5) embryos were obtained from pregnant mice. Swiss or C57Bl6/J female mice were used, and gave similar results.
   
   
3. Reagents
   Note: Work under sterile conditions to prepare all reagents, aliquots and recipes. Aliquots and recipes are prepared for 3 plates.
   1. Ice
   2. Sterile 1x PBS (-CaCl₂, -MgCl₂) (Gibco, catalog number: 14190 [100 ml]), store at 4 °C
   3. Sterile ultrapure H₂O
   4. Leibovitz's L-15 (w/o Phenol Red) (Gibco, catalog number: 21083-027) (500 ml), Prepare working aliquots of 47.5 ml L-15 in 50 ml tubes, store at 4 °C
   5. Poly-L-Lysine (PLL) (Sigma, catalog number: P1524), resuspend at 2 mg/ml in H₂O and prepare working aliquots of 145 µl in 1.5 ml microtubes. store at -20 °C
   6. Poly-D-Lysine (alternative, see Notes) (Sigma, catalog number: P6407), resuspend at 1 mg/ml in H₂O and prepare working aliquots of 15 µl in 1.5 ml microtubes, store at -20 °C
   7. Laminin (Sigma, catalog number: L2020) (1 mg/ml), prepare working aliquots of 20 µl in 1.5 ml microtube, store at -20 °C
   8. N2 supplement (Gibco, catalog number: 17502-048), prepare working aliquots of 200 µl, store at -20 °C
   9. Fetal Bovine Serum (FBS) (Gibco, catalog number: 10270), store 5 ml heat inactivated aliquots (see Recipes, working aliquots 1) at -20 °C
   10. D-(+)-Glucose 30% (Sigma, catalog number: G-8769 [powder]) (see Recipes, working aliquots 2)
   11. Bovine serum albumin (BSA) (Sigma, catalog number: A-4161 [powder]), store at 4 °C (see Recipes, working aliquots 3)
   12. Gentamycin, 10 mg/ml (Sigma, catalog number: G-1272), store at 4 °C
   13. DMEM/F-12 (Glutamax supplement) (Gibco, catalog number: 31331-028 [500 ml]), store at 4 °C
   14. 0.25% Trypsin (Gibco, catalog number: 25050), prepare working aliquots of 200 µl aliquots in 1.5 ml microtubes, store at -20 °C
   15. 4x USP Pancreatin (Gibco, catalog number: 02-0036DG), prepare working aliquots of 200 µl in 1.5 ml microtubes, store at -20 °C
   16. Ascorbic acid 5 mg/ml (Sigma, catalog number: A-4403), store at 4 °C
   17. Reagents for cell surface biotinylation: EZ-Link Sulfo-NHS-SS-Biotin, No-Weigh Format, 8 x 1 mg microtubes (Thermo Fisher Scientific, catalog number: 21328), Waltham, Massachusets, store at -20 °C
   18. Streptavidin-coated beads (Gourier et al., 2008) (alternative, see Notes)
   19. (Optional) HEPES 1 M (Thermo Fisher Scientific, Gibco, catalog number: 15630080) (see Notes) 
   20. Reagent for red blood cell biotinylation: PEG-biotin polymer NHS-PEG 3400-biotin (Interchim, Montluçon, France), store at -20 °C
   21. NaHCO₃
   22. Na₂CO₃
   23. NaCl
   24. Tris base
   25. KH₂PO₄
   26. K₂HPO₄
   27. Paraformaldehyde powder (Sigma, catalog number: P6148), used for fixation (Prepare a 4% solution in 1x PBS)
   28. Triton^TM X-100 (Sigma), used for permeabilization step
   29. Normal Donkey Serum (NDS, Sigma, catalog number: D9663-10ML) for blocking step
   30. Rat α-Ncam (Millipore, catalog number: MAB310) coupled to Donkey α-Rat-Cy3 (Jackson Immunoresearch, catalog number: 712-166-153), used for labeling OSNs axons
   31. Streptavidin-Fitc (FluoProbes, catalog number: FP-20937A), used for labeling biotin attached to axons
   32. Hoechst (Sigma, catalog number: H33258), used for labeling OSNs nuclei
   33. Mowiol^® 4-88 (Sigma, catalog number: 81381) (the mounting medium used)
   34. Working aliquot 1 (see Recipes)
   35. Working aliquot 2 (see Recipes)
   36. Working aliquot 3 (see Recipes)
   37. Solution A (see Recipes)
   38. Solution B (see Recipes)
   39. Solution C (see Recipes)
   40. Solution D (see Recipes)
   41. Solution E (see Recipes)
   42. Solution F (see Recipes)
   43. Biotinylated Red Blood Cells (RBCs) (see Recipes)

Equipment

1. Micropipettes
2. P-2000 Pipette puller (Sutter Instruments, Novato California, USA)
3. Perforated spoon (Moria MC17) (FST, catalog number: 10370-17) or curved forceps Moria 9987 (FST, catalog number: 11399-87) (used to transfer embryo)
4. Forceps: Moria MC40 Forceps–Straight/11cm (FST, 11370-40)
5. Scissors: Moria 9600 Spring Scissors–Straight (FST, 15396-00)
6. Scalpel: Standard incision scalpel, 45°, Aluminum handle, n°745, FEATHER (pfm medical, catalog number: 200300745)
7. Horizontal laminar flow hood (Techgen international, OSN5)
8. CO₂ Incubator (Fisher Bioblock Scientific, Thermo Scientific Forma 371 Steri Cycle CO₂ Incubator)
9. Water bath (Fisher Scientific, Isotemp 105) (to pre-heat medium and reagents at 37 °C)
10. Stereomicroscope (Leica M80), achromatic objective 0.63x for height/length working distance (Leica 10450160) with an illuminated base (Leica 10450123); additional illumination sources: Leica CLS 150X/MED and photonic combination lightguides Leica 30140001
11. Vortex
12. Micro-centrifuge
13. Homemade microforge
14. DMIRB inverted microscope (Leica, Solms, Germany) equipped with a 63x Leica objective, as well as a CCD camera (JAI, Yokohama, Japan), a digitally controlled heating box (Life Imaging Services GmbH, Reinach, Switzerland), and with a micropipette holder coupled to a linear piezoelectric translator (Physik Instrumente, Karlsruhe, Germany) (Gourier et al., 2008)
15. Homemade hydraulic/pneumatic system connected to the micropipette, that provides the necessary control of the aspiration force applied to the probe (Gourier et al., 2008)
    

Procedure

1. Explant culture
   The day before explant preparation
   1. Write all necessary information on each IBIDI video dish at this step (date, sample, condition test). Protect the bottom of the glass dishes from scratches by using a plastic tray. Typically 3 IBIDI video dishes are needed per experiment.
   2. Under the hood (sterile conditions), coat the glass coverslips as follows (only the center of the coverslip needs to be coated):
      1. Dilute a Poly-L-Lysine working aliquot (2 mg/ml) to 200 µg/ml in 1x PBS (-CaCl₂, -MgCl₂), e.g., for PLL coating of 3 dishes, add 9 volumes (1,305 µl) of 1x PBS (-CaCl₂, -MgCl₂) in a 145 µl PLL 2 mg/ml aliquot to obtain 200 µg/ml PLL, and pipet 400 µl PLL in the center of each well. Flatten the drop with the tip (to enlarge it) without touching the glass. Don’t let the drop touch the plastic part of the plate; it will form a meniscus and the central part of the coverslip won’t be correctly coated (Figure 1B').
      2. Carefully transfer the dishes in the incubator and incubate overnight at 37 °C, 5% CO₂.
   
   The day of explant preparation
   1. Equilibrate all necessary reagents at 4 °C on ice (1x PBS [-CaCl₂, -MgCl₂], Laminin, L-15, FBS aliquot for Solution 1 preparation, trypsin and pancreatin aliquots, DMEM/F-12 and small aliquots for culture medium preparation–Solution 2).
   2. Remove the dishes from the incubator. Under the hood, wash the PLL three times for 5 min each with sterile H₂O. Let the coverslip dry completely under the hood (with the cover removed).
   3. Dilute Laminin (stock: 1 mg/ml) to 20 µg/ml in 1x PBS (-CaCl₂, -MgCl₂), e.g., for 3 dishes Laminin coating, add 980 µl 1x PBS (-CaCl₂, -MgCl₂) to a 20 µl Laminin 1 mg/ml aliquot and apply 300 µl of this diluted Laminin solution to the center of each well. It will naturally take the place of the PLL coating.
   4. Incubate the dishes for at least 3 h at 37 °C, 5% CO₂.
   
   Note: The next steps can be done during this coating. 
   5. Prepare the L-15; 5% FBS (Solution A) and store it on ice. 
   6. Prepare the culture medium (Solution B) and store it on ice until the explants are ready. 
   7. Set up the material under the hood (stereomicroscope, glass dish containing cold L-15, forceps, scalpels, tips and pipettes (Figures 1B and 1C).
   8. Embryo collection
      Note: All animal procedures must be approved by an Ethics Committee (for our own experiments, the Ile-de-France Ethics Committee).
      For each experiment, we typically prepare 20 to 30 explants from a total of 3 to 4 embryos extracted from a pregnant female at embryonic day 13.5 (e.g., 5-6 explants per dish, around 20 explants necessary for 3 dishes).
      1. Prepare 1 plastic Petri dish containing 1x PBS to collect the embryos, and keep it on ice.
      2. Euthanize the pregnant female in accordance with the approved protocol validated by the Ethics Committee. In our case, pregnant female Swiss mice were euthanized by cervical elongation at embryonic day 13.5 (E13.5).
      3. Extract the uterine horns containing the embryos from the pregnant mouse (Figure 1A), and collect them in the PBS-containing plastic Petri dish. 
      4. Proceed now with all the subsequent steps under the hood. 
      5. Extract embryos from the uterus and the chorion, respectively. Keep them on ice. 
      6. Transfer the embryos in glass Petri dish containing cold L-15 to the stereomicroscope.
         
         
         Figure 1. Presentation of equipment and tools necessary for embryo recovery and dissection. A. Ventral view of an E13.5 pregnant mouse. The two uterine horns are removed from the mouse. On this picture, the left uterine horn contains 6 embryos and the right horn contains 8 embryos. B. Typical set-up with the Stereomicroscope under the hood, dissecting tools, pipettes and cones, and ice buckets to maintain solutions, dishes and embryos at 4 °C. B' shows a fifty mm diameter IBIDI video dish coated with PLL, in which the explants are cultured. C. Surgery tools. (C1) Perforated spoon (Moria MC17); (C2) curved Forceps Moria 9987; (C3) Moria 9600 Spring Scissors–Straight; (C4) Moria 4877A scissors; (C5) Moria MC40 Forceps; C6: Standard incision scalpel, 45°, Aluminum handle, n°745, FEATHER.
         
         
   9. Dissection
      1. The first step of the dissection aims at removing, from each embryo, a piece of cartilage covered by olfactory mucosa tissue, in a reproducible manner in terms of ventro-dorsal, antero-posterior and lateral boundaries. This piece of tissue will be subsequently called “Olfactory Piece 1” (OP1- Figure 2D). All the subsequent steps are done using the stereomicroscope under the hood, with forceps and microscissors.
         
         
         Figure 2. The main dissection steps for olfactory explant preparation. A. Cut the head using Moria 9600 Spring Scissors. Scale bar = 1 mm. B. The head, see here on its right lateral side, is transferred into a clean dish. Scale bar = 1 mm. C. Stabilize the head, ventral side up, with forceps (forceps tips are seen on the left), cut the hemi-palate with Moria 9600 Spring Scissors (right), to isolate OP1. Scale bar = 1 mm. D. Detailed view of a dissected OP1. To further dissect OP1, separate the septum and the turbinals by cutting according to the dashed lines. Then, cut the septum in 4 pieces and the turbinals in 5 pieces. This gives OP2s. Scale bar = 200 µm. E. View of an OP2 during enzymatic treatment. The olfactory epithelium layer separates from the lamina propria. Scale bar = 200 µm. F. Explants with an asterisk are at the correct distance (about 1 mm) to be cultured together in the same dish. The others are too close to each other and should be removed. R: Rostral; C: Caudal. Scale bar = 200 µm.
         
         
         1. Isolate the upper part of the head by cutting through the mouth on both sides (Figures 2A and 2B). 
         2. Invert the head to see the under side (Figure 2C). At the E13.5 stage, the palate is not completely closed, and this orientation allows direct observation of the septum separating the right and left nasal cavities.
         3. Cut the lateral sides of the developing palate in the horizontal plane (Figure 2C). Once this is done, under the microscope it is possible to see the olfactory mucosa covering this cavity and attached to the septal, dorsal and lateral cartilages. 
         4. Make a coronal section of the tissue through the septum and the turbinate bones (Figure 2C).
         5. Detach the caudal part of OP1 from the olfactory bulb and cut beside the turbinates (Figure 2C, line).
         6. Extract OP1 (Figure 2D), and store in L-15 in a 4-well dish on ice. 
         7. Repeat the same sequence of dissection steps with the other embryos in order to collect all OP1s pieces.
      2. The second step of the dissection aims at extracting small fragments of the olfactory epithelium layer from OP1 pieces.
         1. Transfer a few OP1s into a clean glass Petri dish containing cold L-15. 
         2. Use forceps to maintain them immobile, and cut the described below pieces (hereafter referred to as OP2s) using the microscalpel (Figure 2D).
         3. Make 4 OP2s with the septum part and 5 OP2s with the turbinates. In the turbinates, cut in the curved areas in order to obtain future explants as flat as possible (they will attach more easily to the glass surface). 
         4. Collect all OP2s in one clean well containing L-15 on ice. 
         5. Prepare the enzymatic solution of Trypsin and Pancreatin by pooling an aliquot of 200 µl 0.25% Trypsin with an aliquot of 200 µl of 4x USP Pancreatin (1:1).
         6. Remove the L-15 containing the OP2s and replace it with the enzymatic solution. Avoid bubbles. Incubate at room temperature (30 min. maximum) to allow the Olfactory Epithelium layer to separate from the lamina propria. Facilitate this separation by gently pipetting up and down with a 1,000 µl pipette/tip once or twice during the incubation. To preserve tissue quality, do not exceed 30 min incubation. The lamina propria appears as a white cloudy tissue while the olfactory epithelium as a translucent layer (Figure 2E). 
         7. When the olfactory epithelium (OE) appears to progressively detach from the lamina propria, stop the enzymatic reaction by adding 45 µl of 10% FBS (Working aliquot 1). 
         8. Gently mix by pipetting up and down once. Incubate 5 min at room temperature and transfer on ice. 
         9. Under the stereomicroscope, remove the enzymatic solution and wash 3 times with the L-15; 5% FBS (Solution A). 
         10. Incubate culture medium (Solution B) at 37 °C in a water bath. 
         11. Transfer some OP1 into a glass Petri dish, gently isolate the OE tissue from the lamina propria and cut the OE sheets using the micro-scalpel into small pieces of about 50-150 μm diameter; these are the final explants (Figure 2F). 
         12. Store explants in a clean well containing L-15; 5% FBS on ice. 
         13. Once laminin coating is finished (after minimum 3 h at 37 °C, 5% CO₂), remove the dishes from the incubator. 
         14. Remove the laminin (using a pump aspirator or a pipette) and replace it directly by the appropriate volume of culture medium (6 ml in a 50 mm diameter dish).
   10. Arrangement of explants in the dish
       1. Collect 5 to 6 explants using a 10 µl Pipette + tip and transfer them one by one directly to the appropriate position. 
       2. Place the tip as close as possible to the glass surface without touching it (contact would damage the coating). Explants should slowly descend by gravity. 
       3. Make sure there is at least 1 mm between 2 explants (see Figure 2F for scale). We usually put 5 to 6 explants per dish, forming a cross in the center.
       4. Once the explants have settled, carefully put the dishes back in the incubator at 37 °C, 5% CO₂.
   
   
2. Explant biotinylation and incubation with streptavidin beads
   Notes:
   
   1. After 1.5 days in vitro (DIV), axons are long enough (200-300 µm) to perform micromanipulation experiments to assess axon tension.
   2. The protocol involves the biotinylation of the live explants (including their axons), allowing Streptavidin coated beads to attach to biotinylated axons.
   
   
1. Biotinylation
   The reagent EZ-Link Sulfo-NHS-SS-Biotin is used at 200 µg/ml for 30 min at 37 °C (with gentle shaking):
   1. For 3 dishes, use 2 aliquots of 1 mg of Sulfo-NHS-SS-Biotin.
   2. Wait for equilibration at 4 °C and briefly centrifuge the tubes. 
   3. Resuspend each aliquot in 166 µl DMEM/F-12 and pool (= 332 µl at 6 mg/ml).
   4. Remove 3 ml conditioned medium from the culture and store at 37 °C (will be used for Step B2).
   5. Take out 500 µl conditioned medium of the culture, add 99 µl of biotin solution and put back in the culture (= 200 µg/ml in 3 ml).
   6. Incubate for 30 min at 37 °C with gentle shaking.
2. Strepta-beads (ProActive^® Microspheres, Streptavidin Polymeric: 3 µm diameter, CP01N-1, Bangs Laboratories, Inc., Polysciences Europe GmbH)
   The bead density can vary from one batch to another. Our batch had a concentration of 6.826 x 10⁷ beads/ml. Using a 1/5,000 dilution of these beads, we had a final concentration of 1.36 x 10⁴ beads/ml in each dish, which was to a satisfactory density.
   1. First, prepare the Strepta-Beads solution:
      Note: The 1/5,000 dilution of the beads is performed in 2 steps.
      1. Vortex the beads. 
      2. Predilute the beads at 1/100 in DMEM/F-12 (e.g., 2 µl in 200 µl DMEM/F-12). 
      3. Make a 1/50 dilution of the 1/100 predilution.
      4. Vortex the beads 1/100 and put 60 µl of this predilution in the stored medium (3 ml).
   2. Once biotinylation step is complete, wash each culture 3 times with warm 1x PBS (-CaCl₂, -MgCl₂) and replace with "Strepta-Beads solution". Incubate for 30 min (minimum) at 37 °C, 5% CO₂.
   3. During this incubation step, thaw 1 Working aliquot 3 (BSA10% [v/v] in 2 ml DMEM/F-12) and prepare Solution C (BSA 2% [v/v] 10 ml DMEM/F-12).
   4. Add 1 ml of Solution C to the 3 ml culture medium of each culture dish. Keep the dishes at 37 °C, 5% CO₂, until use.
3. Quality control of the axon biotinylation:
   In order to check that axons are properly biotinylated, and able to be bound by beads, a quality control can be performed. This quality control consists of detecting biotin using streptavidin, and to verify that beads can bind to axons.
   1. Wash once the cultures with 1x PBS. 
   2. Fix the culture for 15 min with 4% PFA at RT.
   3. Wash three times with 1x PBS. 
   4. Permeabilize 10 min at RT with 1x PBS; 0.2% Triton. 
   5. Block for 1 h at RT in 1x PBS; 5% NDS; 0.1% Triton.
   6. Dilute rat α-Ncam at 1/2,000 in 1x PBS; 1% NDS; 0.1% Triton and incubate O/N at 4 °C.
     
   The next day:
   1. Wash three times with 1x PBS. 
   2. Dilute Donkey α-rat Cy3 at 1/1,000, Strepta-Fitc at 1/400 and Hoechst at 1/1,000 in 1x PBS; 1% NDS; 0.1%Triton and incubate for 1 h at RT.
   3. Wash three times with 1x PBS.
   4. Mount the coverslip to the microscope slide with an appropriate mounting medium (e.g., Mowiol^® 4-88).
   5. Observe the results using a fluorescence microscope (Figure 3).
      
      
      Figure 3. Quality control of explant biotinylation. A. Detection of biotin using Steptavidin-FITC on control explant cultures (Aa, Ab, no biotin) or biotinylated cultures (Ac, Ad). Explants were also treated with an α-NCAM antibody detected with red fluorescence to label axons (Ab, Ad) and Hoescht to label cell nuclei (blue, Ab, Ad). Aa and Ac show the streptavidin labeling only, while Ab and Ad show the triple labeling. B. High magnification of a biotinylated axon, showing patches of biotinylation along the axon (green fluorescence), and a glass microbead (square) attached to a large patch. The bead is better seen in the inset.
      
      
3. Axon tension measurement using Biomembrane Force Probe
   The principle, tools and devices used in our experiments are described in details and illustrated by remarkable figures in Gourier et al., 2008. Therefore, in the protocol below, we will not describe the aspects that are already detailed in that technical publication. We will, however present, the detailed protocol and parameters used for tension measurement of olfactory axons.
   1. Micropipette preparation
      Micropipettes are prepared as described in Gourier et al. (2008), as follows:
      1. Elongate a borosilicate glass capillary using the micropipette puller.
      2. Using the microforge, as described in Gourier et al. (2008), adjust the micropipette diameter to give an aperture (inner diameter) of about 2 µm, to optimize the holding of the red blood cell by the pipette.
      3. Fill the micropipette with culture medium.
      4. Fix the micropipette to the micromanipulator mounted on the stage of the microscope and connected to the homemade manometers (Gourier et al., 2008).
      5. Immerse the tip of the pipette in a drop of Solution C deposited on a glass slide for 1 h, allowing the saturation of the pipette glass with BSA.
   2. Biomembrane force probe assembly
      1. Remove the glass slide with the drop of BSA solution from the microscope stage.
      2. Transport the dish containing the biotinylated explant cultures from the incubator to the microscope stage.
      3. Measure the micropipette internal diameter, using the 40x objective and the CCD camera.
      4. Add the steptavidin-coated beads to the culture medium and allow them to settle for 3-5 min. Some of them will attach to axons.
      5. Add biotinylated Red Blood Cells (RBC) to the culture medium.
      6. Catch an RBC floating in the culture with the micropipette, via gentle aspiration (ΔP = 200-250 Pa).
      7. Position this captured RBC in contact with a bead attached to an axon and wait at least 2 min.
      8. Check that the manipulated bead remains attached to both the axon and RBC, by slowly moving the pipette backwards and forwards. If the bead detaches from either the axon or the RBC, repeat the procedure with another bead attached to an axon.
      9. In the favorable cases where the bead remains attached to both the axon and the RBC, proceed with the acquisition of data for tension measurement as follows:
         1. The whole manipulation should be continuously recorded using the CCD camera.
         2. Pull the micropipette a short distance, induce elongation of the RBC; this often results in lateral deflection of the axon. An equilibrium is rapidly reached between the force induced by the probe and the transverse projection of the reaction force of the axon axial tension.
         3. Pull the micropipette again, a bit further, to induce an additional deformation of both the RBC and axon (a second equilibrium is reached).
         4. Repeat gradual force application (through pulling) to acquire several equilibrium stages with different axon deflections, until the bead detaches from the RBC.
      Note: Axons can be manipulated by pulling (as described above) and/or pushing, allowing the acquisition of more equilibrium stages. Detailed illustrations of olfactory axon tension measurement are provided in Šmít et al. (2017a and 2017b).

Data analysis

The video data obtained using this protocol allow the extraction of two key parameters necessary to calculate axon tension: 1) the deformation of the RBC (used here as a force transducer), allowing the calculation of the force (F) with which the bead (and hence the axon) is manipulated; and 2) the deflection of the axon, allowing the calculation of axon tension as a function of the applied force F. At equilibrium, the pulling force F is balanced by the projection of the axon tension (T) in the transverse direction, 2Tsinδ, where δ is the angle of deflection of the axon (Šmít et al., 2017a and 2017b).
  The procedures for assessing these two key parameters, as well as to calculate axon tension, are detailed in one software technical paper (Šmít et al., 2017b), and in a research paper (Šmít et al., 2017a), both in open access. Therefore, the data analyses will not be described further here.

Notes

1. Poly-L-Lysine was used in the experiments described in Šmít et al., 2017a and 2017b. Because Poly-D-Lysine (PDL) is thought to be less toxic for the cultures, we performed experiments using PDL 10 µg/ml, and observed that it is suitable for explant adhesion to the coverslip.
2. PBS 1x 0.06% Glucose can be used for embryo dissection to reduce costs but L-15 medium preserves viability and must be used at least for explant storage. 
3. The microscalpel allows a nice cutting edge, preserves the integrity of the explant and reducing cell death. If this tool is not available, replace it with a 26 G needle at the tip of a 1 ml syringe.
4. The EZ-Link Sulfo-NHS-SS-Biotin is also available by weight (100 mg). We find that using the No-Weigh Format enhances reproducibility.
5. DMEM/F-12 already contains 15 mM HEPES, but if cell culture requires extended periods of manipulation outside of a CO₂ incubator, add 10 mM HEPES in the culture 1 h before processing. 
6. To maintain the cultures at 37 °C during transport from the CO₂ incubator to the micromanipulation laboratory, we stored the Petri dishes in a polystyrene box containing flasks of water preincubated at 37 °C. 
7. Streptavidin-coated beads prepared as in (Gourier et al., 2008) can be replaced by a commercial version: ProActive^® Microspheres, Streptavidin Polymeric: 3 µm diameter, CP01N-1, Bangs Laboratories, Inc., Polysciences Europe GmbH. We have not tested these beads.
   

Recipes

1. Working aliquot 1
   FBS
   1. Heat-inactivate the complement at 56 °C in a water bath for 30 min
   2. Prepare 3 ml aliquots and store at -20 °C
2. Working aliquot 2
   30% D-Glucose, prepare a 30% stock solution in H₂O and store 1 ml aliquots at -20 °C
3. Working aliquot 3
   BSA 10%
   DMEM/F-12
   Note: Used for culture medium–solution 2 and for micropipettes.
   1. Prepare a 10% BSA solution in DMEM/F-12, by dissolving 1 g BSA in 9 ml DMEM/F-12
   2. Dissolution of BSA is enhanced by warming the DMEM/F-12 at 37 °C and vortex
   3. Store on ice and sterilize with a 0.2 µm filter
   4. Make 2 ml aliquots and store at -20 °C
   
   

4. Solution A
   L-15 with 5% FBS
   1. In a 50 ml sterile tube, prepare 47.5 ml L-15 and add 2.5 ml FBS (working aliquot 1)
   2. Sterilize with a 0.2 µm filter and store on ice
5. Solution B (Culture medium)
   DMEM/F12 containing 1% N2 supplement, 0.1 mg/ml Gentamycin, 1.5% D-Glucose, 1% BSA and 7 μg/ml ascorbic acid
   Preparing 20 ml of Solution B
   Six milliliters per 50 mm diameter dish is necessary for culture, e.g., for 3 dishes, in a sterile 50 ml tube, use an aliquot of all necessary components to prepare 20 ml of Solution B: 
   1. Under sterile conditions, prepare 16.6 ml of DMEM/F-12 in a 50 ml tube and add 200 µl of N2 supplement, 200 µl Gentamycin, 1 ml D-Glucose 30% (working aliquot 2), 2 ml of 10% BSA; DMEM/F-12 (working aliquot 3) and 28 µl ascorbic acid
   2. Sterilize using a 0.2 µm filter and store the culture medium on ice until the explants are ready
6. Solution C
   2% BSA in DMEM/F12 (for the micropipettes)
   Preparing 10 ml Solution C
   1. Add 200 µg BSA into 10 ml DMEM/F12 in a 15 ml tube
   2. Incubate at 37 °C in a water bath until complete dissolution
   3. Store on ice to equilibrate at 4 °C
   4. Sterilize using a 0.2 µm filter and store on ice
7. Solution D (for red blood cell biotinylation)
   0.1 M carbonate-bicarbonate, pH 8.5
   1. Prepare the two following solutions: D1: 0.1 M NaHCO₃: 4.2 g/100 ml; D2: 0.1 M Na₂CO₃: 1.06 g/100 ml
   2. Add solution D1 to solution D2 under pH monitoring, until pH reaches 8.5
8. Solution E (for red blood cell biotinylation)
   25 mM Tris
   150 mM NaCl, pH 7.5 
   1. To 800 ml of water, add 3 g of Tris base and 8.8 g of NaCl
   2. Adjust the pH to 7.5 using 1 N HCl, and add water q.s.p. 1000 ml
9. Solution F (for red blood cell biotinylation)
   0.01 M phosphate buffer
   150 mM NaCl, pH 7.4
   1. Prepare the following 4 solutions:
      F1: 0.01 M KH₂PO₄: 1.36 g/100 ml
      F2: 0.01 M K₂HPO₄: 1.74 g/100 ml
      F3: 150 mM NaCl: 8.7 g/100 ml
      F4: Add solution F1 to solution F2 under pH monitoring, until pH reaches 7.4
   2. Solution F is then obtained by adding 100 ml solution F3 to 100 ml solution F4 and add water q.s.p. 1,000 ml
10. Biotinylated Red Blood Cell (RBC) preparation (protocol from Gourier et al., 2008)
    Note: All centrifugation steps of RBCs are performed for 2 min at 4,000 x g. All steps are performed at room temperature.
    1. Collect 2-3 μl of human blood using a needle (TERUMO 26 G ½), and transfer to a 1.5 ml Eppendorf tube
    2. Wash 2 times in 1 ml Solution F, each time by vortexing and subsequently pelleting by centrifugation (4,000 x g, 2 min), and removing the solution
    3. Wash 3 times in Solution D as above
    4. Prepare 1 ml solution of NHS-PEG 3400-biotin solution (2 mg/ml) in Solution D
    5. Immediately mix 688.5 μl of the above solution with the washed RBC, and 9,308.5 μl of Solution D
    6. Incubate for 1 h, under gentle agitation
    7. Wash 3 times in Solution E
    8. Suspend the pelleted RBCs in 10 ml Solution E
    9. Incubate for 30 min under gentle agitation
    10. Wash 3 times in Solution F
    11. Suspend the pelleted RBC in 100 μl Solution F
    12. The biotinylated RBC solution can be stored for 1 week at 4 °C

Acknowledgments

This work was supported by Sorbonne Université, CNRS, INSERM, ANR-2010-BLAN-1401-01 and NIH 5R01DC012441. We thank Christine Gourier and Pierre Soule for technical help and helpful discussion regarding BFP experiments, Ann Lohof for proofreading of the manuscript, and Daniel Šmít, Frederic Pincet and Martin Zapotocky for their scientific contribution to our overall project involving axon tension measurement.

Competing interests

The authors declare no conflicts of interest or competing interests.

Ethics

Our experiments on animals were approved by the Ile de France Ethics Committee (approval number 2018021915046521_v5).

References

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