发布: 2021年06月20日第11卷第12期 DOI: 10.21769/BioProtoc.4054 浏览次数: 2460
评审: Ali Asghar KermaniKumiko OkazakiAnonymous reviewer(s)
相关实验方案
小鼠脑裂解物中细胞类型特异性 mRNA 的核糖体翻译亲和纯化 (TRAP)
Catherine L. Salussolia [...] Mustafa Sahin
2022年05月05日 4009 阅读
Abstract
Liposomes have been used as a pseudo cell membrane for encapsulating biomolecules and creating an artificial cell in the interior where biochemical reactions can occur. Among the several methods used to prepare biomolecule-encapsulating liposomes, the spontaneous emulsion transfer method is superior to others in that it allows us to readily prepare relatively large liposomes whose sizes are controlled (from micrometer- to millimeter-sized liposomes) without special equipment. However, conventional protocols for this method require liposomes to contain a considerably high concentration of sucrose (high-density solute), which severely inhibits gene expression, one of the most important biochemical reactions. Thus, we optimized the preparation conditions to develop a wheat germ extract (WGE)-based protocol that requires a much lower concentration of sucrose and has almost no effect on eukaryotic cell-free translation. Our protocol allows us to successfully prepare millimeter-sized, moderately stable, WGE-encapsulating liposomes in which WGE translation takes place efficiently. Since a broad range of genes derived from various types of organisms can be efficiently translated in a WGE-based translation system, liposomes prepared using our protocol would be useful as a versatile research tool for artificial cells.
Keywords: Artificial cell (人造细胞)Background
Liposomes are spherical vesicles composed mainly of double-layered phospholipids, similar to a living cell membrane; thus, they have been used as containers for biomolecules to construct artificial cells that allow for biochemical reactions (e.g., gene expression) in the interior separately from and/or in communication with the exterior (Walde et al., 2010).
Several methods are available for preparing liposomes that encapsulate biomolecules. In particular, a manual emulsion transfer method is useful for readily preparing relatively large liposomes with a diameter of more than 1 μm (called giant unilamellar vesicles, GUVs) without the need for special equipment such as an evaporator or a microfluidic device (Pautot et al., 2003; Noireaux et al., 2004). In this method, a water-in-oil emulsion that is covered with a phospholipid layer in an upper oil phase (containing phospholipids) is transferred into a lower water phase to be further covered with another phospholipid layer in the phase interface, thus forming a liposome.
Although a centrifuge is generally used for the phase transfer, an emulsion droplet can be transferred spontaneously just by adding a high-density solute (e.g., sucrose) without centrifugation, which often forces the formed liposome to burst (Hamada et al., 2008). Needless to say, the difference in density between the droplet and the water phase is key to the successful spontaneous phase transfer. This spontaneous method enables us to control the size of a liposome by adjusting the droplet volume, and surprisingly, to prepare a supergiant liposome with a diameter of more than 1 mm (called a supergiant unilamellar vesicle, SGUV), which can be observed by the naked eye without a microscope using a microliter-sized droplet (Kubatta et al., 2009).
However, conventional protocols for spontaneous emulsion transfer have the drawback that they require the inclusion of a considerably high concentration of sucrose (10-30% w/v) in the droplet that is to be spontaneously transferred. Such high amounts of sucrose severely inhibit gene expression, one of the most important biochemical reactions (Elani et al., 2015). For example, eukaryotic cell-free translation based on wheat germ extract (WGE) is suppressed by more than 80% in the presence of 10% w/v sucrose (Takahashi and Ogawa, 2020). Thus, we optimized the preparation conditions to permit droplet transfer at a much lower concentration of sucrose (approx. 1.5% w/v) that hardly affects WGE translation (Takahashi and Ogawa, 2020).
Our protocol with the optimized conditions allows us to prepare WGE-encapsulating SGUVs in which WGE translation takes place as efficiently as outside a liposome. The average successful formation rate of SGUVs is more than 90%, and the formed SGUVs are mostly stable for more than 60 min. The size of SGUVs can be controlled precisely (diameter = 1.6-4.4 mm) without impairing their formation or stability just by changing the volume of the droplet. No special equipment is required for the preparation or observation of SGUVs. Moreover, given that a WGE-based translation system enables the expression of a broad range of genes from various types of organisms (both eukaryotes and prokaryotes) as well as viruses (Madono et al., 2011), WGE-encapsulating SGUVs prepared using our protocol would be useful as a versatile research tool in cell-free synthetic biology (Hodgman and Jewett, 2012; Lentini et al., 2016; Kai and Schwille, 2019).
Materials and Reagents
Nuclease-free 2 ml tubes (WATSON, catalog number: 132-620C)
Nuclease-free PCR tubes (any brand)
Nuclease-free 1.7 ml tubes (any brand)
Nuclease-free 15 ml tubes (any brand)
Nuclease-free pipette tips (any brand)
Parafilm
384-well microplates (Greiner Bio-One, catalog number: 781801)
[For analyzing fluorescent protein] 96-well black plates (Corning, catalog number: 3915)
Nuclease-free water (Sigma-Aldrich, catalog number: W4502 or equivalent)
Linear double-stranded DNA encoding the protein of interest. The 5′ UTR sequence should be GAT TTA GGT GAC ACT ATAGAA CTC ACC TAT CTC CCC AAC ACC TAA TAA CAT TCA ATC ACT CTT TCC ACT AAC CAC CTA TCT ACA TCA CCA AGA TAT CAC TAG T (the SP6 promoter is underlined; a translational enhancer sequence named E01 is italicized; Kamura et al., 2005). Although any 3′ UTR sequence is permissible, its length should be more than 1,200 nt (Ogawa et al., 2014). Store at -20°C until use. See the instructions of the following kit for preparing the DNA.
SP6-Scribe Standard RNA IVT Kit (CellScript, catalog number: C-AS3106)
QIAquick Nucleotide Removal Kit (QIAGEN, catalog number: 28304) or RNeasy MinElute Cleanup Kit (QIAGEN, catalog number: 74204)
WEPRO1240 (CellFree Sciences, catalog number: CFS-WGE-1240). Divide into smaller volumes and store at -80°C
Nuclease-free sucrose (FUJIFILM Wako, catalog number: 198-13525)
Asolectin (FUJIFILM Wako, catalog number: 390-00271). Seal the container with parafilm and store at 4°C away from moisture
Mineral oil for molecular biology (Sigma-Aldrich, catalog number: M5904)
Creatine kinase (Roche, catalog number: 10127566001)
SUB-AMIX (CellFree Sciences, catalog number: CFS-SUB): a reaction buffer containing a mixture of substrates for translation such as amino acids and energy sources
Creatine kinase solution (see Recipes)
SUB-AMIX solution (see Recipes)
Translation solution (for twelve SGUVs with a volume of 2.5 μl) (see Recipes)
Equipment
Micropipettes (any brand)
Incubator (22°C, any brand)
Refrigerator (4°C, any brand)
Freezers (-80°C and -20°C, any brand)
Digital scale (any brand)
Vortex (any brand)
UV/vis microplate reader (Thermo Fisher Scientific, model: Multiskan GO) or an alternative instrument capable of RNA quantitation
[For analyzing fluorescent protein] Fluorescence plate reader (PerkinElmer, model: ARVO X2)
[For analyzing fluorescent protein] Blue-LED light source with an appropriate filter (OptoCode, model: LEDB-MBOXH or ATTO, model: Visirays-B)
Procedure
文章信息
版权信息
© 2021 The Authors; exclusive licensee Bio-protocol LLC.
如何引用
Takahashi, H. and Ogawa, A. (2021). A Detailed Protocol for Preparing Millimeter-sized Supergiant Liposomes that Permit Efficient Eukaryotic Cell-free Translation in the Interior. Bio-protocol 11(12): e4054. DOI: 10.21769/BioProtoc.4054.
分类
生物工程 > 生物医学工程
生物化学 > RNA > mRNA翻译
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