Chitin is polymer of N-acetylglucosamine (GlcNAc) found in the exoskeleton of arthropods and the fungal cell wall. GlcNAc is also implicated in bacterial development, adherence, and signal transduction but can also be used as a carbon source. In vitro chitin binding assay is performed to determine the affinity of a purified protein to the chitin molecule. The principle is based on the co-sedimentation of chitin-binding proteins together with chitin-coated beads.
Purified protein with chitin binding affinity Note: We used histidine-tagged chitin binding protein CbpD. The protein was purified by affinity chromatography onto a 5-ml HisTrap nickel column (Pharmacia) on an Äkta system (Amersham Biosciences). The complete purification protocol is described in details in Cadoret et al. (2014).
Chitin beads (New England Biolabs, catalog number: S6651 )
Tris Base
EDTA
NaCl
Tween 100
Freshly made solution of chitin binding buffer (see Recipes)
Equipment
Laboratory vortex adapted to Eppendorf tubes
Laboratory rotating wheel adapted to Eppendorf tubes