Olfaction is a well-studied sensory mechanism in Caenorhabditis elegans (C. elegans). The nematodes respond to a wide range of chemicals by either attraction, repulsion or a mixture thereof (Bargmann et al., 1993). We have used olfaction to characterize behavioural and molecular circadian rhythms in C. elegans. The circadian clock is a biological oscillator that provides an endogenous temporal structure that approximately matches the 24-hour periodicity in the environment (due to the rotational movement of the Earth). Circadian rhythms are present in most organisms from cyanobacteria to humans and they typically regulate sensory functions among many other processes. Olfaction is under circadian control in many animals (Granados-Fuentes et al., 2006; Granados-Fuentes et al., 2011; Tanoue et al., 2008; Krishnan et al., 1999). This protocol was designed to allow the assessment of olfaction for a population of worms within a short time interval, in the same plate where the worms grew (to avoid washing steps that may disturb the rhythms), and in the presence of food.
Egg preparation 100 eggs are used for each petri dish. Assays are performed in triplicate.
LB broth
Cholesterol
Ethanol
CaCl2
MgSO4
KPO4
3.7% (v/v) 1-octanol (Merck KGaA, catalog number: 820931 ) in Ethanol This concentration was established after a titration assay to find the lowest concentration needed for a fast response (within the minutes range) (Olmedo et al., 2012)
NGM plates (see Recipes) Note: For one experiment, always use plates that were poured from the same batch and were allowed to dry for the same amount of time.
Escherichia coli (E. coli) OP50 culture at 100 g wet bacterial weight/liter (see Recipes)
Equipment
Template for labeling plate (Figure 1)
Figure 1. Template for plate labeling. On a piece of paper or plastic, draw a 5 cm-diameter circle in which to place the petri dish and a concentric 1 cm-diameter circle to mark the spot for the E. coli drop. Mark the center of this circle (A) with a dot. Draw another dot (B) at 0.8 cm from the center of the circle.
5 cm Petri plates
Stereomicroscope equipped for picture acquisition (we use a Stereo Discovery V8 from Zeiss at a 10x magnification.)
Merrow, M. and Olmedo, M. (2014). In situ Chemotaxis Assay in Caenorhabditis elegans (for the Study of Circadian Rhythms). Bio-protocol 4(3): e1040. DOI: 10.21769/BioProtoc.1040.