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Immunology

Isolation of PBMCs Using Vacutainer® Cellular Preparation Tubes (CPTTM)

Authors: Alaina Puleo
Alaina PuleoAffiliation: Institute for Immunity, Transplantation, and Infection, Stanford University School of Medicine, Stanford, Palo Alto, CA, USA
Bio-protocol author page: a4007
Chantia Carroll
Chantia CarrollAffiliation: Institute for Immunity, Transplantation, and Infection, Stanford University School of Medicine, Stanford, Palo Alto, CA, USA
Bio-protocol author page: a4008
Holden Maecker
Holden MaeckerAffiliation: Institute for Immunity, Transplantation, and Infection, Stanford University School of Medicine, Stanford, Palo Alto, CA, USA
For correspondence: maecker@stanford.edu
Bio-protocol author page: a1861
 and Rohit Gupta
Rohit GuptaAffiliation: Institute for Immunity, Transplantation, and Infection, Stanford University School of Medicine, Stanford, Palo Alto, CA, USA
Bio-protocol author page: a1867
date: 1/20/2017, 1883 views, 0 Q&A
DOI: https://doi.org/10.21769/BioProtoc.2103.

[Abstract] Peripheral blood mononuclear cell (PBMC) isolation is commonly done via density gradient centrifugation over Ficoll-Hypaque, a labor-intensive procedure that requires skilled technicians and can contribute to sample variability. Cellular Preparation Tubes (CPTs) are Vacutainer blood draw tubes that contain Ficoll-Hypaque and a gel plug that separates ...

Isolation of Highly Pure Primary Mouse Alveolar Epithelial Type II Cells by Flow Cytometric Cell Sorting

Authors: Meenal Sinha
Meenal SinhaAffiliation: Department of Laboratory Medicine and the Program in Immunology, University of California, San Francisco, USA
For correspondence: meenal.sinha@ucsf.edu
Bio-protocol author page: a3723
 and Clifford A. Lowell
Clifford A. LowellAffiliation: Department of Laboratory Medicine and the Program in Immunology, University of California, San Francisco, USA
Bio-protocol author page: a3724
date: 11/20/2016, 1778 views, 0 Q&A
DOI: https://doi.org/10.21769/BioProtoc.2013.

[Abstract] In this protocol, we describe the method for isolating highly pure primary alveolar epithelial type II (ATII) cells from lungs of naïve mice. The method combines negative selection for a variety of lineage markers along with positive selection for EpCAM, a pan-epithelial cell marker. This method yields 2-3 x 106 ATII cells per mouse lung. The cell ...

Isolation of Intestinal Mesenchymal Cells from Adult Mice

Authors: Vasiliki Koliaraki
Vasiliki KoliarakiAffiliation: Biomedical Sciences Research Centre (B.S.R.C.) “Alexander Fleming”, Vari, Greece
For correspondence: koliaraki@fleming.gr
Bio-protocol author page: a3531
 and George Kollias
George KolliasAffiliation 1: Biomedical Sciences Research Centre (B.S.R.C.) “Alexander Fleming”, Vari, Greece
Affiliation 2: Department of Physiology, Medical School, University of Athens, Athens, Greece
Bio-protocol author page: a3532
date: 9/20/2016, 1669 views, 0 Q&A
DOI: https://doi.org/10.21769/BioProtoc.1940.

[Abstract] During the last 20 years intestinal mesenchymal cells (IMCs) have emerged as an important cell type that plays a central role in intestinal development and homeostasis, by providing both structural support and growth regulatory elements. IMCs also actively participate in wound healing responses, thus regulating pathologic conditions such as tissue ...

Isolation of Joint-infiltrating Cells

Authors: Aoi Akitsu
Aoi AkitsuAffiliation: Center for Animal Disease Models, Research Institute for Biomedical Sciences, Tokyo University of Science, Chiba, Japan
For correspondence: aoipinky@rs.tus.ac.jp
Bio-protocol author page: a3457
 and Yoichiro Iwakura
Yoichiro IwakuraAffiliation: Center for Animal Disease Models, Research Institute for Biomedical Sciences, Tokyo University of Science, Chiba, Japan
Bio-protocol author page: a3458
date: 9/5/2016, 1122 views, 0 Q&A
DOI: https://doi.org/10.21769/BioProtoc.1911.

[Abstract] Infiltration of leukocytes into joints is one of the main features of autoimmune inflammatory arthritis. Here, we describe the protocol for isolation of joint-infiltrating cells in mice. This protocol is useful to analyze cell surface antigens and intracellular cytokines by flow cytometry....

Adoptive Transfer of Tumor Expanded Regulatory T Cells (Tregs)

Authors: Felipe Vences-Catalán
Felipe Vences-CatalánAffiliation: Department of Medicine, Division of Oncology, Stanford University, Stanford, CA, USA
For correspondence: fvences5@stanford.edu
Bio-protocol author page: a3419
 and Shoshana Levy
Shoshana LevyAffiliation: Department of Medicine, Division of Oncology, Stanford University, Stanford, CA, USA
For correspondence: slevy@stanford.edu
Bio-protocol author page: a3420
date: 8/20/2016, 1498 views, 0 Q&A
DOI: https://doi.org/10.21769/BioProtoc.1899.

[Abstract] Regulatory T cells (Tregs), a subset of CD4+CD25+ T cells, infiltrate tumors and suppress antitumor activity of effector T and NK cells. Depletion of Tregs by anti CD25+ antibodies has been shown to reduce tumor growth and metastasis (Olkhanud et al., 2009). Conversely, adoptive transfer of Tregs induced immune suppression and promoted tumor growth ...

Mouse Embryonic Fibroblast Cell Culture and Stimulation

Authors: Lian-Qun Qiu
Lian-Qun QiuAffiliation: Post-transcriptional Gene Expression Group, Signal Transduction Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, USA
For correspondence: qiul@niehs.nih.gov
Bio-protocol author page: a3276
Wi S. Lai
Wi S. LaiAffiliation: Post-transcriptional Gene Expression Group, Signal Transduction Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, USA
Bio-protocol author page: a3277
Deborah J. Stumpo
Deborah J. StumpoAffiliation: Post-transcriptional Gene Expression Group, Signal Transduction Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, USA
Bio-protocol author page: a3278
 and Perry J. Blackshear
Perry J. BlackshearAffiliation: Post-transcriptional Gene Expression Group, Signal Transduction Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, USA
Bio-protocol author page: a3279
date: 7/5/2016, 2551 views, 0 Q&A
DOI: https://doi.org/10.21769/BioProtoc.1859.

[Abstract] Culture of mouse embryonic fibroblast (MEF) cells represents a powerful system to test gene function due to their easy accessibility, rapid growth rates, and the possibility of a large number of experiments. Fibroblasts are a group of heterogeneous resident cells of mesenchymal origin that have various locations, diverse appearances and distinctive ...

Whole-mount Enteroid Proliferation Staining

Authors: Caitlyn W. Barrett
Caitlyn W. BarrettAffiliation: Department of Medicine, Division of Gastroenterology, Hepatology, and Nutrition, and Department of Cancer Biology, Vanderbilt University Medical School, Nashville, USA
Bio-protocol author page: a3254
Sarah P. Short
Sarah P. ShortAffiliation: Department of Medicine, Division of Gastroenterology, Hepatology, and Nutrition, and Department of Cancer Biology, Vanderbilt University Medical School, Nashville, USA
Bio-protocol author page: a3255
Yash A. Choksi
Yash A. Choksi Affiliation: Department of Medicine, Division of Gastroenterology, Hepatology, and Nutrition, and Department of Cancer Biology, Vanderbilt University Medical School, Nashville, USA
Bio-protocol author page: a3256
 and Christopher Shawn Williams
Christopher Shawn WilliamsAffiliation: Department of Medicine, Division of Gastroenterology, Hepatology, and Nutrition, and Department of Cancer Biology, Vanderbilt University Medical School, Nashville, USA
For correspondence: Christopher.williams@vanderbilt.edu
Bio-protocol author page: a3253
date: 6/20/2016, 1576 views, 0 Q&A
DOI: https://doi.org/10.21769/BioProtoc.1837.

[Abstract] Small intestinal organoids, otherwise known as enteroids, have become an increasingly utilized model for intestinal biology in vitro as they recapitulate the various epithelial cells within the intestinal crypt (Mahe et al., 2013; Sato et al., 2009). Assessment of growth dynamics within these cultures is an important step to understanding how alterations ...

Isolation and Culture of the Islets of Langerhans from Mouse Pancreas

Authors: Kate L Graham
Kate L GrahamAffiliation 1: Immunology and Diabetes Unit, St. Vincent’s Institute, Melbourne, Australia
Affiliation 2: Department of Medicine, The University of Melbourne, Melbourne, Australia
Bio-protocol author page: a3224
Stacey Fynch
Stacey FynchAffiliation: Immunology and Diabetes Unit, St. Vincent’s Institute, Melbourne, Australia
Bio-protocol author page: a3225
Evan G Pappas
Evan G PappasAffiliation: Immunology and Diabetes Unit, St. Vincent’s Institute, Melbourne, Australia
Bio-protocol author page: a3226
Christina Tan
Christina TanAffiliation: Immunology and Diabetes Unit, St. Vincent’s Institute, Melbourne, Australia
Bio-protocol author page: a3227
Thomas WH Kay
Thomas WH KayAffiliation 1: Immunology and Diabetes Unit, St. Vincent’s Institute, Melbourne, Australia
Affiliation 2: Department of Medicine, The University of Melbourne, Melbourne, Australia
Bio-protocol author page: a3228
 and Helen E Thomas
Helen E ThomasAffiliation 1: Immunology and Diabetes Unit, St. Vincent’s Institute, Melbourne, Australia
Affiliation 2: Department of Medicine, The University of Melbourne, Melbourne, Australia
For correspondence: hthomas@svi.edu.au
Bio-protocol author page: a3229
date: 6/20/2016, 2673 views, 0 Q&A
DOI: https://doi.org/10.21769/BioProtoc.1840.

[Abstract] The islets of Langerhans are clusters of endocrine cells located within the pancreas. Insulin-producing beta cells are the major cell type within islets, with glucagon-producing alpha cells and somatostatin-producing delta cells the other major cell types. The beta cells are the target of immune-mediated destruction in type 1 diabetes (Graham et al., ...

Preparation of Single Cell Suspensions from Mouse Aorta

Authors: Desheng Hu
Desheng HuAffiliation 1: Institute for Immunology, Ludwig-Maximilians-University Munich, Munich, Germany
Affiliation 2: Institute of Molecular Immunology, Helmholtz Zentrum Munich, Munich, Germany
For correspondence: desheng.hu@med.uni-muenchen.de
Bio-protocol author page: a3210
Changjun Yin
Changjun YinAffiliation: Institute for Cardiovascular Prevention, Ludwig-Maximilians-University Munich, Munich, Germany
Bio-protocol author page: a3208
Sarajo Mohanta
Sarajo MohantaAffiliation: Institute for Cardiovascular Prevention, Ludwig-Maximilians-University Munich, Munich, Germany
Bio-protocol author page: a3207
Christian Weber
Christian WeberAffiliation: Institute for Cardiovascular Prevention, Ludwig-Maximilians-University Munich, Munich, Germany
Bio-protocol author page: a3209
 and Andreas J. R. Habenicht
Andreas J. R. HabenichtAffiliation: Institute for Cardiovascular Prevention, Ludwig-Maximilians-University Munich, Munich, Germany
Bio-protocol author page: a3211
date: 6/5/2016, 2207 views, 0 Q&A
DOI: https://doi.org/10.21769/BioProtoc.1832.

[Abstract] Atherosclerosis is a chronic inflammatory disease of the arterial wall characterized by lipid deposition, plaque formation, and immune cell infiltration. Innate and adaptive immune cells infiltrate the artery during development of the disease. Moreover, advanced disease leads to formation of artery tertiary lymphoid organs in the adventitia (Grabner ...

In vitro Differentiation of Murine Innate Lymphoid Cells from Common Lymphoid Progenitor Cells

Authors: Corey Seehus
Corey SeehusAffiliation: Research Division of Immunology, Departments of Biomedical Sciences and Medicine, Cedars Sinai Medical Center, Los Angeles, USA
For correspondence: corey.seehus@csmc.edu
Bio-protocol author page: a3005
 and Jonathan Kaye
Jonathan KayeAffiliation: Research Division of Immunology, Departments of Biomedical Sciences and Medicine, Cedars Sinai Medical Center, Los Angeles, USA
Bio-protocol author page: a3006
date: 3/20/2016, 1769 views, 0 Q&A
DOI: https://doi.org/10.21769/BioProtoc.1770.

[Abstract] Subtypes of innate lymphoid cells (ILC), defined based on their cytokine secretion profiles and transcription factor expression, are important for host protection from pathogens and maintaining tissue homeostasis. ILCs develop from common lymphoid progenitors (CLP) in the bone marrow. Using the methods described here, we have previously shown that ...
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In vitro Culture of Human PBMCs

Authors: Santosh K Panda
Santosh K PandaAffiliation: Infectious Disease Biology, Institute of Life Sciences, Bhubaneswar, India
Bio-protocol author page: a221
 and Balachandran Ravindran
Balachandran RavindranAffiliation: Infectious Disease Biology, Institute of Life Sciences, Bhubaneswar, India
For correspondence: ravindran8@gmail.com
Bio-protocol author page: a222
date: 2/5/2013, 45547 views, 4 Q&A
DOI: https://doi.org/10.21769/BioProtoc.322.

[Abstract] Peripheral blood mononuclear cells (PBMCs) consist of chiefly of lymphocytes and monocytes. Purified PBMCs are used in vitro to evaluate a variety of functions of lymphocytes viz; a) proliferation to mitogenic (PHA, Con-A) stimulation, b) monitoring of prior sensitisation in antigen recall assays by ...

Isolation and Culture of Mouse Bone Marrow-derived Macrophages (BMM’phi’)

Author: Ran Chen
Ran ChenAffiliation: Department of Genetics, Stanford University, Stanford, USA
For correspondence: rcchen@jfkbio.com
Bio-protocol author page: a34
date: 2/5/2012, 36280 views, 15 Q&A
DOI: https://doi.org/10.21769/BioProtoc.68.

[Abstract] Bone marrow derived macrophages are a type of white blood cell that can be isolated from mammalian bone marrow. In this protocol, a method is described in which bone marrow cells are isolated from mouse leg bones (femur and tibia), and then differentiated to bone marrow-derived macrophages in approximately ...

Isolation of Human PBMCs

Authors: Santosh K Panda
Santosh K PandaAffiliation: Infectious Disease Biology, Institute of Life Sciences, Bhubaneswar, India
Bio-protocol author page: a221
 and Balachandran Ravindran
Balachandran RavindranAffiliation: Infectious Disease Biology, Institute of Life Sciences, Bhubaneswar, India
For correspondence: ravindran8@gmail.com
Bio-protocol author page: a222
date: 2/5/2013, 23266 views, 0 Q&A
DOI: https://doi.org/10.21769/BioProtoc.323.

[Abstract] Peripheral blood mononuclear cells (PBMCs) are chiefly lymphocytes and monocytes. PBMCs are separated from the whole blood by a density gradient centrifugation method using Ficoll Histopaque....

Bronchoalveolar Lavage and Lung Tissue Digestion

Authors: Hongwei Han
Hongwei HanAffiliation: Immunology Program, Benaroya Research Institute, Seattle, USA
For correspondence: hhan@benaroyaresearch.org
Bio-protocol author page: a544
 and Steven F. Ziegler
Steven F. ZieglerAffiliation: Immunology Program, Benaroya Research Institute, Seattle, USA
For correspondence: sziegler@benaroyaresearch.org
Bio-protocol author page: a543
date: 8/20/2013, 14054 views, 0 Q&A
DOI: https://doi.org/10.21769/BioProtoc.859.

[Abstract] Bronchoalveolar lavage (BAL) is a simple but valuable and typically performed technique commonly used for studying the pathogenesis of lung diseases such as asthma and COPD. Cell counts can be combined with new methods for examining inflammatory responses, such as ELISA, Flow cytometric analysis, immunohistochemistry, ...

Isolation of Dendritic Cells and Macrophages from the Murine Kidneys of Lupus by Cell Sorter

Authors: Ramalingam Bethunaickan
Ramalingam BethunaickanAffiliation: Center for Autoimmunity and Musculoskeletal Diseases, Feinstein Institute for Medical Research, New York, USA
For correspondence: bramalingam@gmail.com
Bio-protocol author page: a24
 and Anne Davidson
Anne DavidsonAffiliation: Center for Autoimmunity and Musculoskeletal Diseases, Feinstein Institute for Medical Research, New York, USA
Bio-protocol author page: a1712
Anne Davidson Lab, date: 4/20/2012, 13616 views, 0 Q&A
DOI: https://doi.org/10.21769/BioProtoc.168.

[Abstract] Methods for the isolation and characterization of mononuclear phagocytes from the kidneys of mice with SLE are essential to understand the patho-physiology of the disease. Activation of these cells is associated with the onset of clinical disease in mice and infiltration with these cells is associated ...

Harvest and Culture of Mouse Peritoneal Macrophages

Authors: Mingfang Lu
Mingfang LuAffiliation: Internal Medicine, University of Texas Southwestern Medical School, Dallas, TX, USA
Bio-protocol author page: a990
 and Alan W. Varley
Alan W. VarleyAffiliation: Internal Medicine, University of Texas Southwestern Medical School, Dallas, TX, USA
For correspondence: alanwaynevarley@gmail.com
Bio-protocol author page: a991
date: 11/20/2013, 13130 views, 1 Q&A
DOI: https://doi.org/10.21769/BioProtoc.976.

[Abstract] Peritoneal macrophages are used as primary macrophages in lots of studies, mainly because they are easy to obtain. Injection of thioglycollate broth i.p. induces inflammatory responses and elicits large numbers of macrophages. This protocol can be used for harvesting resident or thioglycollate-elicited ...

Isolation, Purification, and Culture of Primary Murine Microglia Cells

Authors: Xuqin Chen
Xuqin ChenAffiliation: Department of Neurology, Affiliated Children's Hospital, Soochow University, Suzhou, China
For correspondence: xuqinlili@yahoo.com
Bio-protocol author page: a202
Ye Zhang
Ye ZhangAffiliation: Department of Neurology, Affiliated Children's Hospital, Soochow University, Suzhou, China
Bio-protocol author page: a203
Gaitri Sadadcharam
Gaitri SadadcharamAffiliation: Department of Neurology, Affiliated Children's Hospital, Soochow University, Suzhou, China
Bio-protocol author page: a204
Weili Cui
Weili CuiAffiliation: Department of Neurology, Affiliated Children's Hospital, Soochow University, Suzhou, China
Bio-protocol author page: a205
 and Jiang Huai Wang
Jiang Huai WangAffiliation: Department of Neurology, Affiliated Children's Hospital, Soochow University, Suzhou, China
For correspondence: jh.wang@ucc.ie
Bio-protocol author page: a206
date: 1/5/2013, 12889 views, 0 Q&A
DOI: https://doi.org/10.21769/BioProtoc.314.

[Abstract] The following is a detailed protocol for the isolation, purification and culture of murine brain microglia cells using neutral enzyme digestion and shaking. The protocol below is designed to isolate and culture a large number of purified inactivated microglia cells. Neutral enzyme digestion allows ...

Generation of Mouse Bone Marrow-Derived Dendritic Cells (BM-DCs)

Authors: Francesca Granucci
Francesca GranucciAffiliation: Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy
For correspondence: francesca.granucci@unimib.it
Bio-protocol author page: a59
Renato Ostuni
Renato OstuniAffiliation: Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy
Bio-protocol author page: a58
 and Ivan Zanoni
Ivan ZanoniAffiliation: Department of Biotechnology and Biosciences, University of Milano-Bicocca, Milan, Italy
For correspondence: ivan.zanoni@unimib.it
Bio-protocol author page: a54
date: 6/20/2012, 10004 views, 0 Q&A
DOI: https://doi.org/10.21769/BioProtoc.226.

[Abstract] Generating mouse dendritic cells from bone-marrow progenitor cells is a useful tool to study biological functions of mouse dendritic cells. Dendritic cells are one of the major populations of phagocytes able to activate both innate and adaptive immune cells. ...

Cell Isolation of Spleen Mononuclear Cells

Author: Benno Weigmann
Benno WeigmannAffiliation: Department of Medicine 1, University Clinic, Erlangen, Germany
For correspondence: benno.weigmann@uk-erlangen.de
Bio-protocol author page: a321
date: 5/5/2013, 9719 views, 0 Q&A
DOI: https://doi.org/10.21769/BioProtoc.689.

[Abstract] This method allows you to isolate different subclass mononuclear cells, like B-cells, T cells, CD4+ and CD8+ T, from mouse spleen. By conjugating cells with specific antibodies and subsequently magnetic beads isolation, using the technique from Miltenyi, this allows a high purity....

Generation of Human iNKT Cell Lines

Authors: Xiangming Li
Xiangming LiAffiliation: HIV and Malaria Vaccine Program, Aaron Diamond AIDS Research Center, New York, USA
Bio-protocol author page: a440
Moriya Tsuji
Moriya TsujiAffiliation: HIV and Malaria Vaccine Program, Aaron Diamond AIDS Research Center, New York, USA
Bio-protocol author page: a441
Jonathan Schneck
Jonathan SchneckAffiliation: Department of Pathology, Johns Hopkins University, Baltimore, USA
Bio-protocol author page: a443
 and Tonya J. Webb
Tonya J. WebbAffiliation: Microbiology and Immunology Department, University of Maryland School of Medicine, Baltimore, USA
For correspondence: twebb@som.umaryland.edu
Bio-protocol author page: a315
date: 3/20/2013, 9404 views, 3 Q&A
DOI: https://doi.org/10.21769/BioProtoc.418.

[Abstract] Natural killer T (NKT) cells comprise an important immunoregulatory T cell subset and express cell surface proteins characteristic of both natural killer cells and T cells. Invariant NKT (iNKT) cells are activated by lipid antigen presented in the context of CD1d molecules, in contrast to classic T ...
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