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Proper spatiotemporal regulation of protein phosphorylation in cells and tissues is required for normal development and homeostasis. We present the protocol ‘In Gel Kinase Assay’, which is useful for protein kinase activity measurements from crude protein extracts. We have successfully used ‘In Gel Kinase Assay’ protocol to show that the Arabidopsis thaliana sextuple mutant in the PYRABACTIN RESISTANCE1/PYR1-LIKE/REGULATORY COMPONENTS OF ABA RECEPTORS (PYR/PYL/RCAR-ABA receptors; line pyr/pyl112458) is impaired in ABA-mediated activation of SnRK2.2, SnRK2.3 and OST1/SnRK2.6, as much as the triple mutant snrk2.2/2.3/2.6 (Gonzalez-Guzman et al., 2012).
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[Abstract] Proper spatiotemporal regulation of protein phosphorylation in cells and tissues is required for normal development and homeostasis. We present the protocol ‘In Gel Kinase Assay’, which is useful for protein kinase activity measurements from crude protein extracts. We have successfully used ‘In Gel Kinase Assay’ protocol to show that the Arabidopsis thaliana sextuple mutant in the PYRABACTIN RESISTANCE1/PYR1-LIKE/REGULATORY COMPONENTS OF ABA RECEPTORS (PYR/PYL/RCAR-ABA receptors; line pyr/pyl112458) is impaired in ABA-mediated activation of SnRK2.2, SnRK2.3 and OST1/SnRK2.6, as much as the triple mutant snrk2.2/2.3/2.6 (Gonzalez-Guzman et al., 2012).
Keywords: Kinases, Phosphorylation, in vivo, Enzymatic activity, SnRKs, ABA, Arabidopsis
[Background] The phytohormone abscisic acid (ABA) is a key signal involved in plant growth and development as well as in plant response to abiotic and biotic stress. The ABA perception and signaling pathway is composed of PYRABACTIN RESISTANCE1/PYR1-LIKE/REGULATORY COMPONENTS OF ABA RECEPTORS (PYR/PYL/RCAR-ABA receptors), PP2Cs phosphatases and SnRK2s kinases (reviewed in Antoni et al., 2011). The module receptor-ABA-phosphatase controls the phosphorylation signaling cascades in a ligand-dependent manner through regulation of ABA-activated SnRK2s. In turn, SnRK2s kinases phosphorylate a myriad of effectors, both in the nucleus and in the cytoplasm, from transcription factors (e.g., ABFs) to ion channels (e.g., SLAC1). We show here the protocol ‘In Gel Kinase Assay’ in details. This protocol was developed for protein kinase activity measurement in plant tissues protein extracts as well as from purified recombinant kinases. In brief: a SDS-polyacrylamide gel is prepared containing the ∆C-ABF2 peptide (a specific SnRK2.2, SnRK2.3, OST1/SnRK2.6 kinase substrate). ∆C-ABF2 peptide is trapped in the SDS-polyacrylamide gel mesh and it does not migrate during electrophoresis. On the other hand, SDS-treated protein samples, without boiling and without any reducing agent (e.g., DTT or B-ME), are only partially denatured and can be re-naturalized in some degree after washing SDS out. Moreover, kinase activity at a high sensitive level can be measured using [Gamma-32p]ATP. In this way, together with the kinase activity value we also have the electrophoretic mobility value associated with the kinase activity. Using a plant crude protein extract, and after sample electrophoresis and in gel protein renaturalization step, we can measure specific SnRK2.2/2.3/2.6 (SnRK2s) kinase activity in gel. We have applied this protocol to characterize SnRK2s activity in a PYR/PYL/RCAR-ABA receptor sextuple mutant. We show that the sextuple mutant line pyr/pyl112458 is impaired in ABA-mediated activation of SnRK2s, as much as the triple mutant snrk2.2/2.3/2.6 in Arabidopsis thaliana (result published in Gonzalez-Guzman et al., 2012).
Materials and Reagents
Equipment
Software
Procedure
Note: Although this protocol was developed for plant tissue protein extracts as well as recombinant proteins, it potentially can also be applied for protein extracts from any other source. Even more, this protocol could also be valid for samples obtained from immunoprecipitation assay (Vlad et al., 2009).
Data analysis
In Figure 1 we show activity of His-tagged OST1 protein kinase (OST1/SnRK2.6-6HIS; Vlad et al., 2009) produced in E. coli. This kinase became autophosphorylated and active in absence of PP2Cs phosphatases. As expected, we see an increment in OST1 activity when we load more amount of the purified protein sample. On the other hand, we monitored the in vivo activation status of SnRK2s using crude protein extracts from wild-type (Col-0) and mutant lines: pyr/pyl112458 and snrk2.2/2.3/2.6 (Figure 2). The ‘In Gel Kinase Assay’ show kinase activity in the three ABA-activated SnRK2s (SnRK2.2/2.3/2.6), identified as a double band between 42 to 44 kD, in ABA-treated (100 µM ABA) Col-0. By contrast, as expected, this SnRK2s kinase activity was absent in control conditions Col-0 (mock treated) and in the ABA-treated (100 µM ABA) mutant line snrk2.2/2.3/2.6. Interestingly, the ‘In Gel Kinase Assay’ did not detect any activation of the SnRK2s in the sextuple mutant line pyr/pyl112458 after 100 µM ABA treatment. This result supports the idea that PYR/PYL112458 receptors are the main players in ABA perception and signaling. Figure 1. Kinase activity measurement of recombinant OST1/SnRK2.6-6HIS. OST1/SnRK2.6-6HIS was produced in E. coli and purified by Ni affinity. Different recombinant protein amount where tested: 0.01, 0.05, 0.1, 0.5, 1, 5 and 10 µg. 1 h and 72 h: exposure time. Figure 2. In vivo monitoring of SnRK2s activity. Wild-type (Col-0) and mutant lines: pyr/pyl112458 and snrk2.2/2.3/2.6 were mock or ABA (100 µM) treated for 30 min. A. SnRK2.2/2.3/2.6 kinase activity is detectable in ABA-treated (100 µM ABA) Col-0 and it is not detected in Col-0 control conditions (mock treated) neither ABA-treated (100 µM ABA) mutant line snrk2.2/2.3/2.6 nor sextuple mutant line pyr/pyl112458. Recombinant OST1/SnRK2.6-6HIS was used as a positive control. B. A parallel Coomasie stained SDS-PAGE. MW: molecular weight [kD]: 72, 55 and 43. RuBP-L: RuBisCO large chain. Note: Given the necessity, substrate phosphorylation by SnRK2.2/2.3/2.6 over time can be quantified by densitometric analysis using open source software (e.g., ImageJ). Band signal volume (band area x band total intensity) in the phosphorylation assay gel must be calculated and the protein loading in the SDS-PAGE should be checked (a parallel Coomassie stained SDS-PAGE is an option).
Notes
Recipes
Acknowledgments
We thank Prof. Christiane Laurière for giving us kind assistance in the development of this protocol. This work was supported by the Ministerio de Ciencia e Innovación, Fondo Europeo de Desarrollo Regional, and Consejo Superior de Investigaciones Científicas (grant BIO2014-52537-R to P.L.R). This protocol was adapted from the research article of Gonzalez-Guzman et al. (2012). The author declares no conflicts of interest.
References
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