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Isabelle M. Henry


Ph.D in Biology, Department of Biology, University of Washington, 2005

Current position

Associate Project Scientist, Department of Plant Biology and Genome Center, University of California Davis, Davis, CA, USA

Publications (since 2003)

  1. Inagaki, S., Henry, I. M., Lieberman, M. C. and Comai, L. (2015). High-Throughput Analysis of T-DNA Location and Structure Using Sequence Capture. PLoS One 10(10): e0139672.
  2. Henry, I. M., Zinkgraf, M. S., Groover, A. T. and Comai, L. (2015). A System for Dosage-Based Functional Genomics in Poplar. Plant Cell 27(9): 2370-2383.
  3. Tan, E. H., Henry, I. M., Ravi, M., Bradnam, K. R., Mandakova, T., Marimuthu, M. P., Korf, I., Lysak, M. A., Comai, L. and Chan, S. W. (2015). Catastrophic chromosomal restructuring during genome elimination in plants. Elife 4.
  4. O'Geen, H., Henry, I. M., Bhakta, M. S., Meckler, J. F. and Segal, D. J. (2015). A genome-wide analysis of Cas9 binding specificity using ChIP-seq and targeted sequence capture. Nucleic Acids Res 43(6): 3389-3404.
  5. Akagi, T., Henry, I. M., Tao, R. and Comai, L. (2014). Plant genetics. A Y-chromosome-encoded small RNA acts as a sex determinant in persimmons. Science 346(6209): 646-650.
  6. Ravi, M., Marimuthu, M. P., Tan, E. H., Maheshwari, S., Henry, I. M., Marin-Rodriguez, B., Urtecho, G., Tan, J., Thornhill, K., Zhu, F., Panoli, A., Sundaresan, V., Britt, A. B., Comai, L. and Chan, S. W. (2014). A haploid genetics toolbox for Arabidopsis thaliana. Nat Commun 5: 5334.
  7. Dang, T. V., Windelinckx, S., Henry, I. M., De Coninck, B., Cammue, B. P., Swennen, R. and Remy, S. (2014). Assessment of RNAi-induced silencing in banana (Musa spp.). BMC Res Notes 7: 655.
  8. Henry, I. M., Nagalakshmi, U., Lieberman, M. C., Ngo, K. J., Krasileva, K. V., Vasquez-Gross, H., Akhunova, A., Akhunov, E., Dubcovsky, J., Tai, T. H. and Comai, L. (2014). Efficient Genome-Wide Detection and Cataloging of EMS-Induced Mutations Using Exome Capture and Next-Generation Sequencing. Plant Cell 26(4): 1382-1397.
  9. Henry, I. M., Dilkes, B. P., Tyagi, A., Gao, J., Christensen, B. and Comai, L. (2014). The BOY NAMED SUE quantitative trait locus confers increased meiotic stability to an adapted natural allopolyploid of Arabidopsis. Plant Cell 26(1): 181-194.
  10. Bhakta, M. S., Henry, I. M., Ousterout, D. G., Das, K. T., Lockwood, S. H., Meckler, J. F., Wallen, M. C., Zykovich, A., Yu, Y., Leo, H., Xu, L., Gersbach, C. A. and Segal, D. J. (2013). Highly active zinc-finger nucleases by extended modular assembly. Genome Res 23(3): 530-538.
  11. Missirian, V., Henry, I. M., Comai, L. and Filkov, V. (2012). POPE: Pipeline of Parentally-Biased Expression. In: Măndoiu, Ion, Sunderraman, Rajshekhar, Zelikovsky, Alexander (Eds.). Bioinformatics Research and Applications - Lecture Notes in Computer Science, 2012, Volume 7292/2012, 177-188.
  12. Seymour, D. K., Filiault, D. L., Henry, I. M., Monson-Miller, J., Ravi, M., Pang, A., Comai, L., Chan, S. W. and Maloof, J. N. (2012). Rapid creation of Arabidopsis doubled haploid lines for quantitative trait locus mapping. Proc Natl Acad Sci U S A 109(11): 4227-4232.
  13. Monson-Miller, J., Sanchez-Mendez, D. C., Fass, J., Henry, I. M., Tai, T. H. and Comai, L. (2012). Reference genome-independent assessment of mutation density using restriction enzyme-phased sequencing. BMC Genomics 13: 72.
  14. Podevin, N., Krauss, A., Henry, I., Swennen, R. and Remy, S. (2012). Selection and validation of reference genes for quantitative RT-PCR expression studies of the non-model crop Musa. Mol Breed 30(3): 1237-1252.
  15. Henry, I. M., Carpentier, S. C., Pampurova, S., Van Hoylandt, A., Panis, B., Swennen, R. and Remy, S. (2011). Structure and regulation of the Asr gene family in banana. Planta 234(4): 785-798.
  16. Henry, I. M., Dilkes, B. P., Miller, E. S., Burkart-Waco, D. and Comai, L. (2010). Phenotypic consequences of aneuploidy in Arabidopsis thaliana. Genetics 186(4): 1231-1245.
  17. Pignatta, D., Dilkes, B. P., Yoo, S. Y., Henry, I. M., Madlung, A., Doerge, R. W., Jeffrey Chen, Z. and Comai, L. (2010). Differential sensitivity of the Arabidopsis thaliana transcriptome and enhancers to the effects of genome doubling. New Phytol 186(1): 194-206.
  18. Henry, I. M., Dilkes, B. P., Tyagi, A. P., Lin, H. Y. and Comai, L. (2009). Dosage and parent-of-origin effects shaping aneuploid swarms in A. thaliana. Heredity (Edinb) 103(6): 458-468.
  19. Henry, I. M., Dilkes, B. P. and Comai, L. (2007). Genetic basis for dosage sensitivity in Arabidopsis thaliana. PLoS Genet 3(4): e70.
  20. Henry, I. M., Dilkes, B. P. and Comai, L. (2006). Molecular karyotyping and aneuploidy detection in Arabidopsis thaliana using quantitative fluorescent polymerase chain reaction. Plant J 48(2): 307-319.
  21. Henry, I. M., Dilkes, B. P., Young, K., Watson, B., Wu, H. and Comai, L. (2005). Aneuploidy and genetic variation in the Arabidopsis thaliana triploid response. Genetics 170(4): 1979-1988.
  22. Henry, I. M., Wilkinson, M. D., Hernandez, J. M., Schwarz-Sommer, Z., Grotewold, E. and Mandoli, D. F. (2004). Comparison of ESTs from juvenile and adult phases of the giant unicellular green alga Acetabularia acetabulum. BMC Plant Biol 4: 3.
  23. Henry, I. M. and Mandoli, D. F. (2003). Precious cells contain precious information: strategies and pitfalls in expression analysis from a few cells. Methods Mol Biol 236: 59-78.
Protocols by Isabelle M. Henry
  1. Chromosome Dosage Analysis in Plants Using Whole Genome Sequencing