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Shih-Shun Lin

Education

Ph.D. in Graduate Institute of Agricultural Biotechnology, National Chung-Hsing University, Taiwan, 2001

Current position

Associate Professor in Institute of Biotechnology, National Taiwan University

Publication (since 2005)

  1. Lin, P. C., Lu, C. W., Shen, B. N., Lee, G. Z., Bowman, J. L., Arteaga-Vazquez, M. A., Liu, L. Y., Hong, S. F., Lo, C. F., Su, G. M., Kohchi, T., Ishizaki, K., Zachgo, S., Althoff, F., Takenaka, M., Yamato, K. T. and Lin, S. S.* (2016). Identification of miRNAs and Their Targets in the Liverwort Marchantia polymorpha by Integrating RNA-Seq and Degradome Analyses. Plant Cell Physiol 57(2): 339-358. (*Correspond author)
  2. Bowman, J. L., Araki, T., Arteaga-Vazquez, M. A., Berger, F., Dolan, L., Haseloff, J., Ishizaki, K., Kyozuka, J., Lin, S. S., Nagasaki, H., Nakagami, H., Nakajima, K., Nakamura, Y., Ohashi-Ito, K., Sawa, S., Shimamura, M., Solano, R., Tsukaya, H., Ueda, T., Watanabe, Y., Yamato, K. T., Zachgo, S. and Kohchi, T. (2016). The Naming of Names: Guidelines for Gene Nomenclature in Marchantia. Plant Cell Physiol 57(2): 257-261.
  3. Chen, K. I., Pan, C. Y., Li, K. H., Huang, Y. C., Lu, C. W., Tang, C. Y., Su, Y. W., Tseng, L. W., Tseng, K. C., Lin, C. Y., Chen, C. D., Lin, S. S.* and Chen, Y. T.* (2015). Isolation and Identification of Post-Transcriptional Gene Silencing-Related Micro-RNAs by Functionalized Silicon Nanowire Field-effect Transistor. Sci Rep 5: 17375. (*Co-correspond author)
  4. Liu, C. T., Huang, H. M., Hong, S. F., Kuo-Huang, L. L., Yang, C. Y., Lin, Y. Y., Lin, C. P.* and Lin, S. S.* (2015). Peanut witches' broom (PnWB) phytoplasma-mediated leafy flower symptoms and abnormal vascular bundles development. Plant Signal Behav 10(12): e1107690. (*Co-correspond author)
  5. Lee, C. T., Chen, I. T., Yang, Y. T., Ko, T. P., Huang, Y. T., Huang, J. Y., Huang, M. F., Lin, S. J., Chen, C. Y., Lin, S. S., Lightner, D. V., Wang, H. C., Wang, A. H., Wang, H. C., Hor, L. I. and Lo, C. F. (2015). The opportunistic marine pathogen Vibrio parahaemolyticus becomes virulent by acquiring a plasmid that expresses a deadly toxin. Proc Natl Acad Sci U S A 112(34): 10798-10803.
  6. Liao, H. F., Mo, C. F., Wu, S. C., Cheng, D. H., Yu, C. Y., Chang, K. W., Kao, T. H., Lu, C. W., Pinskaya, M., Morillon, A., Lin, S. S., Cheng, W. T., Bourc'his, D., Bestor, T., Sung, L. Y. and Lin, S. P. (2015). Dnmt3l-knockout donor cells improve somatic cell nuclear transfer reprogramming efficiency. Reproduction 150(4): 245-256.
  7. Yang, C. Y., Huang, Y. H., Lin, C. P., Lin, Y. Y., Hsu, H. C., Wang, C. N., Liu, L. Y., Shen, B. N. and Lin, S. S.* (2015). MicroRNA396-Targeted SHORT VEGETATIVE PHASE Is Required to Repress Flowering and Is Related to the Development of Abnormal Flower Symptoms by the Phyllody Symptoms1 Effector. Plant Physiol 168(4): 1702-1716. (*Correspond author)
  8. Hu, S. F., Huang, Y. H., Lin, C. P., Liu, L. Y., Hong, S. F., Yang, C. Y., Lo, H. F., Tseng, T. Y., Chen, W. Y. and Lin, S. S.* (2015). Development of a Mild Viral Expression System for Gain-Of-Function Study of Phytoplasma Effector In Planta. PLoS One 10(6): e0130139. (*Correspond author)
  9. Huang, C. H., Hsiao, W. R., Huang, C. W., Chen, K. C., Lin, S. S., Chen, T. C., Raja, J. A., Wu, H. W. and Yeh, S. D. (2015). Two Novel Motifs of Watermelon Silver Mottle Virus NSs Protein Are Responsible for RNA Silencing Suppression and Pathogenicity. PLoS One 10(5): e0126161.
  10. Lin, Y. L., Ma, L. T., Lee, Y. R., Lin, S. S., Wang, S. Y., Chang, T. T., Shaw, J. F., Li, W. H. and Chu, F. H. (2015). MicroRNA-like small RNAs prediction in the development of Antrodia cinnamomea. PLoS One 10(4): e0123245.
  11. Lin, P. C., Hu, W. C., Lee, S. C., Chen, Y. L., Lee, C. Y., Chen, Y. R., Liu, L. Y., Chen, P. Y., Lin, S. S.* and Chang, Y. C.* (2015). Application of an Integrated Omics Approach for Identifying Host Proteins That Interact With Odontoglossum ringspot virus Capsid Protein. Mol Plant Microbe Interact 28(6): 711-726. (*Co-correspond author)
  12. Wen, C. H., Lin, S. S. and Chu, F. H. (2015). Transcriptome analysis of a subtropical deciduous tree: autumn leaf senescence gene expression profile of formosan gum. Plant Cell Physiol 56(1): 163-174.
  13. Yang, Y. T., Chen, I. T., Lee, C. T., Chen, C. Y., Lin, S. S., Hor, L. I., Tseng, T. C., Huang, Y. T., Sritunyalucksana, K., Thitamadee, S., Wang, H. C. and Lo, C. F. (2014). Draft Genome Sequences of Four Strains of Vibrio parahaemolyticus, Three of Which Cause Early Mortality Syndrome/Acute Hepatopancreatic Necrosis Disease in Shrimp in China and Thailand. Genome Announc 2(5).
  14. Yang, Y. T., Lee, D. Y., Wang, Y., Hu, J. M., Li, W. H., Leu, J. H., Chang, G. D., Ke, H. M., Kang, S. T., Lin, S. S., Kou, G. H. and Lo, C. F. (2014). The genome and occlusion bodies of marine Penaeus monodon nudivirus (PmNV, also known as MBV and PemoNPV) suggest that it should be assigned to a new nudivirus genus that is distinct from the terrestrial nudiviruses. BMC Genomics 15: 628.
  15. Kung, Y. J., Lin, P. C., Yeh, S. D., Hong, S. F., Chua, N. H., Liu, L. Y., Lin, C. P., Huang, Y. H., Wu, H. W., Chen, C. C. and Lin, S. S.* (2014). Genetic analyses of the FRNK motif function of Turnip mosaic virus uncover multiple and potentially interactive pathways of cross-protection. Mol Plant Microbe Interact 27(9): 944-955. (*Correspond author)
  16. Tseng, H. I., Lin, C. P. and Lin, S. S.* (2014). Characterization and identification of Catharanthus roseus epigenetic-related genes that in response to peanut witches’-broom phytoplasma-mediated infection. Plant Pathol. Bull. 23:67-77 (*Correspond author)
  17. Liu, L. Y., Tseng, H. I., Lin, C. P., Lin, Y. Y., Huang, Y. H., Huang, C. K., Chang, T. H. and Lin, S. S.* (2014). High-throughput transcriptome analysis of the leafy flower transition of Catharanthus roseus induced by peanut witches'-broom phytoplasma infection. Plant Cell Physiol 55(5): 942-957. (*Correspond author) (Cover photo)
  18. Youngson, N. A., Lin, P. C. and Lin, S. S.* (2014). The convergence of autophagy, small RNA and the stress response - implications for transgenerational epigenetic inheritance in plants. Biomol Concepts 5(1): 1-8. (*Correspond author)
  19. Chiu, M. T., Lin, C. P., Lin, P. C. and Lin, S. S.* (2013). Enhancement of IgG purification by FPLC for a serological study on the Turnip mosaic virus P1 protein. Plant Pathol. Bull. 22:21-30 (*Correspond author)
  20. Lin, Y. Y., Fang, M. M., Lin, P. C., Chiu, M. T., Liu, L. Y., Lin, C. P. and Lin, S. S.* 2013. Improving initial infectivity of the Turnip mosaic virus (TuMV) infectious clone by an mini binary vector via agro-infiltration. Botanical Studies 54:22 (*Correspond author)
  21. Wang, L. Y., Lin, S. S., Hung, T. H., Li, T. K., Lin, N. C. and Shen, T. L. (2012). Multiple domains of the tobacco mosaic virus p126 protein can independently suppress local and systemic RNA silencing. Mol Plant Microbe Interact 25(5): 648-657.
  22. Kung, Y. J., Lin, S. S., Huang, Y. L., Chen, T. C., Harish, S. S., Chua, N. H. and Yeh, S. D. (2012). Multiple artificial microRNAs targeting conserved motifs of the replicase gene confer robust transgenic resistance to negative-sense single-stranded RNA plant virus. Mol Plant Pathol 13(3): 303-317.
  23. Lafforgue, G., Martinez, F., Sardanyes, J., de la Iglesia, F., Niu, Q. W., Lin, S. S., Sole, R. V., Chua, N. H., Daros, J. A. and Elena, S. F. (2011). Tempo and mode of plant RNA virus escape from RNA interference-mediated resistance. J Virol 85(19): 9686-9695.
  24. Wu, H. W.*, Lin, S. S.*, Chen, K. C., Yeh, S. D. and Chua, N. H. (2010). Discriminating mutations of HC-Pro of zucchini yellow mosaic virus with differential effects on small RNA pathways involved in viral pathogenicity and symptom development. Mol Plant Microbe Interact 23(1): 17-28. (*Co-first author)
  25. Lin, S. S.*, Wu, H. W.*, Elena, S. F., Chen, K. C., Niu, Q. W., Yeh, S. D., Chen, C. C. and Chua, N. H. (2009). Molecular evolution of a viral non-coding sequence under the selective pressure of amiRNA-mediated silencing. PLoS Pathog 5(2): e1000312. (*Co-first author)
  26. Lin, S. S., Martin, R., Mongrand, S., Vandenabeele, S., Chen, K. C., Jang, I. C. and Chua, N. H. (2008). RING1 E3 ligase localizes to plasma membrane lipid rafts to trigger FB1-induced programmed cell death in Arabidopsis. Plant J 56(4): 550-561.
  27. Lin, S. S., Henriques, R., Wu, H. W., Niu, Q. W., Yeh, S. D. and Chua, N. H. (2007). Strategies and mechanisms of plant virus resistance. Plant Biotechnol. Rep. 1:125-134 (Review)
  28. Lin, S. S., Wu, H. W., Jan, F. J., Hou, R. F. and Yeh, S. D. (2007). Modifications of the Helper Component-Protease of Zucchini yellow mosaic virus for Generation of Attenuated Mutants for Cross Protection Against Severe Infection. Phytopathology 97(3): 287-296. (Cover photo)
  29. Chiang, C. H., Lee, C. Y., Wang, C. H., Jan, F. J., Lin, S. S., Chen, T. C., Raja, J. A. J. and Yeh, S. D. (2007). Genetic analysis of an attenuated Papaya ringspot virus strain applied for cross-protection. Eur. J. Plant Pathol. 118:333-348
  30. Chen, C. C., Chen, T. C., Raja, J. A., Chang, C. A., Chen, L. W., Lin, S. S. and Yeh, S. D. (2007). Effectiveness and stability of heterologous proteins expressed in plants by Turnip mosaic virus vector at five different insertion sites. Virus Res 130(1-2): 210-227.
  31. Niu, Q. W.*, Lin, S. S.*, Reyes, J. L., Chen, K. C., Wu, H. W., Yeh, S. D. and Chua, N. H. (2006). Expression of artificial microRNAs in transgenic Arabidopsis thaliana confers virus resistance. Nat Biotechnol 24(11): 1420-1428. (*Co-first author)
  32. Zhang, X., Yuan, Y. R., Pei, Y., Lin, S. S., Tuschl, T., Patel, D. J. and Chua, N. H. (2006). Cucumber mosaic virus-encoded 2b suppressor inhibits Arabidopsis Argonaute1 cleavage activity to counter plant defense. Genes Dev 20(23): 3255-3268.
  33. Zhang, X., Henriques, R., Lin, S. S., Niu, Q. W. and Chua, N. H. (2006). Agrobacterium-mediated transformation of Arabidopsis thaliana using the floral dip method. Nat Protoc 1(2): 641-646..

Protocols by Shih-Shun Lin
  1. An in vitro Transcription/translation System for Detection of Protein Interaction