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Coauthors
Khalil Kashkush Department of Life Sciences, Ben-Gurion University, Israel
2 protocols
Coreviewers
Ru Zhang Donald Danforth Plant Science Center
49 protocols

Samik Bhattacharya Department of Botany, Osnabrueck University, Germany
48 protocols

Tie Liu Carnegie Institution for Science, Stanford University
147 protocols

Beery Yaakov
  • The Institutes for Desert Research, Midreshet Ben-Gurion
Research focus
  • Molecular biology
Contributions
  • 2 Author merit
  • 2 Reviewer merit

Education

M.S., Department of Life Science,  Ben-Gurion University of the Negev, 2010

Current position

Ph.D. student, Department of Life Science at Ben-Gurion University of the Negev

Publications

  1. Yaakov B. and Kashkush K. (2013) High resolution detection of genetic changes associated with transposons. Bio-protocol.org, 3(11): http://www.bio-protocol.org/wenzhang.aspx?id=788.
  2. Yaakov B. and Kashkush K. (2013) Detection of DNA methylation changes surrounding transposable elements. Bio-protocol.org, 3(11): http://www.bio-protocol.org/wenzhang.aspx?id=784.
  3. Yaakov B.1, Meyer K.1, Ben-David S. and Kashkush K. (2013) Substantial copy number variation of transposable elements in Triticum-Aegilops genus revealed evolutionary and revolutionary changes following allopolyploidization. Plant Cell Reports, submitted.
  4. Ben-David S.1, Yaakov B.1 and Kashkush K. (2013) Genome-wide analysis of short interspersed nuclear elements (SINEs) revealed high sequence conservation, gene association and transpositional activity in wheat. The Plant Journal, submitted.
  5. Yaakov, B.1, Ben-David, S.1 and Kashkush, K. (2013). Genome-wide analysis of Stowaway-like MITEs in wheat reveals high sequence conservation, gene association, and genomic diversification. Plant Physiol 161(1): 486-496.
  6. Yaakov, B. and Kashkush, K. (2012). Mobilization of Stowaway-like MITEs in newly formed allohexaploid wheat species. Plant Mol Biol 80(4-5): 419-427.    
  7. Yaakov B., Ceylan E., Domb K. and Kashkush K. (2012). MITEs provide new insights into the wheat phylogeny. Theoretical and Applied Genetics, 124: 1365-1373.
  8. Yaakov, B. and Kashkush, K. (2011). Methylation, transcription, and rearrangements of transposable elements in synthetic allopolyploids. Int J Plant Genomics 2011: 569826.    
  9. Yaakov, B. and Kashkush, K. (2011). Massive alterations of the methylation patterns around DNA transposons in the first four generations of a newly formed wheat allohexaploid. Genome 54(1): 42-49.   
  10. Khasdan, V.1, Yaakov, B.1, Kraitshtein, Z. and Kashkush, K. (2010). Developmental timing of DNA elimination following allopolyploidization in wheat. Genetics 185(1): 387-390.    
  11. Kraitshtein, Z., Yaakov, B., Khasdan, V. and Kashkush, K. (2010). Genetic and epigenetic dynamics of a retrotransposon after allopolyploidization of wheat. Genetics 186(3): 801-812.    

    1These authors have contributed equally to this work. 
2 Protocols published
High Resolution Detection of Genetic Changes Associated with Transposons
Authors:  Beery Yaakov and Khalil Kashkush, date: 06/05/2013, view: 4029, Q&A: 0
Transposable elements (TEs) are repetitive sequences, capable of inducing genetic mutations through their transpositional activity, or by non-homologous or illegitimate recombination. Because of their similarity and often high copy numbers, ...
Detection of DNA Methylation Changes Surrounding Transposable Elements
Authors:  Beery Yaakov and Khalil Kashkush, date: 06/05/2013, view: 4735, Q&A: 0
Transposable elements (TEs) are a major component of all genomes, thus the epigenetic mechanisms controlling their activity is an important field of study. Cytosine methylation is one of the factors regulating the transcription and transposition of ...
2 Protocols reviewed
Isolation of Tomato Fruit Chromoplasts and Determination of ATP Levels
It has recently been reported that tomato fruit chromoplasts can synthesize ATP de novo using an ATP synthase complex harboring an atypical γ-subunit which is also present in a variety of plant species. However many aspects related with the ...
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Arabidopsis thaliana Embryo Sac Mitochondrial Membrane Potential Stain
The aim of this experiment is to study mitochondrial functional status in Arabidopsis embryo sacs using the membrane potential indicator JC-1. Changes in the membrane potential are presumed to be due to the opening of the mitochondrial ...
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