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Coauthors
Guohui Li State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, The Chinese Academy of Sciences, China
1 protocol

Haojun Liang Department of Polymer Science and Engineering, University of Science and Technology of China, China
1 protocol

Yongmei Wang Department of Chemistry, University of Memphis, USA
1 protocol

Beisi Xu
  • State Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, The Chinese Academy of Sciences, China
Contributions
  • 1 Author merit

Education

Ph.D. in Polymer, University of Science and Technology of China, 2009

Current position

Postdoctoral Fellow, University of Tennessee Health Science Center, Memphis, Tennessee, United States of America

Publications

  1. Xu, B., Schones, D. E., Wang, Y., Liang, H. and Li, G. (2013). A structural-based strategy for recognition of transcription factor binding sites. PLoS One 8(1): e52460.
  2. Xu, B., Yang, Y., Liang, H. and Zhou, Y. (2009). An all-atom knowledge-based energy function for protein-DNA threading, docking decoy discrimination, and prediction of transcription-factor binding profiles. Proteins 76(3): 718-730.
  3. Xu, B., Shen, H., Zhu, X. and Li, G. (2011). Fast and accurate computation schemes for evaluating vibrational entropy of proteins. J Comput Chem 32(15): 3188-3193.
  4. Chen, J., Wang, J., Xu, B., Zhu, W. and Li, G. (2011). Insight into mechanism of small molecule inhibitors of the MDM2-p53 interaction: molecular dynamics simulation and free energy analysis. J Mol Graph Model 30: 46-53.
  5. Liu, R. J., Tan, M., Du, D. H., Xu, B. S., Eriani, G. and Wang, E. D. (2011). Peripheral insertion modulates the editing activity of the isolated CP1 domain of leucyl-tRNA synthetase. Biochem J 440(2): 217-227.
  6. Xu, B., Huang, L. and Liang, H. (2004). Thermodynamic behaviors of polyampholytes at low temperatures. J Chem Phys 121(15): 7494-7500.

1 Protocol published
Structural Based Strategy for Predicting Transcription Factor Binding Sites
Authors:  Beisi Xu, Yongmei Wang, Haojun Liang and Guohui Li, date: 06/20/2013, view: 4207, Q&A: 0
Scanning through genomes for potential transcription factor binding sites (TFBSs) is becoming increasingly important in this post-genomic era. The position weight matrix (PWM) is the standard representation of TFBSs utilized when scanning through ...