Johny Ijaq Department of Zoology, Osmania University, India
1 protocol

Anuj Kumar Bioinformatics center, Uttarakhand Council for Biotechnology,, India
1 protocol

MNV Prasad Prasad Gajula
  • Institute of Biotechnology, PJTSAU, Rajendra Nagar, India
Research focus
  • Biophysics
  • 1 Author merit


Ph.D in Natural Sciences, Department of Physics, University of Osnabrueck, Germany, 2008

Current Position

Research Scientist (Bioinformatics), DST Ramanujan Fellow, Institute of Biotechnology, PJTSAU, Hyderabad, India


  1. Kumar, A., Kumar, S., Kumar, U., Suravajhala, P. and Gajula, MNV. P. (2016). Functional and structural insights into novel DREB1A transcription factors in common wheat (Triticum aestivum L.): A molecular modeling approach. Computational Biology and Chemistry 64: 217-226. 
  2. Bhawna, Bonthala, V. S. and Gajula, M. P. (2016). PvTFDB: a Phaseolus vulgaris transcription factors database for expediting functional genomics in legumes. Database (Oxford) 2016.
  3. Bhawna, Chaduvula, P. K., Bonthala, V. S., Manjusha, V., Siddiq, E. A., Polumetla, A. K. and Prasad, G. M. (2015). CmMDb: a versatile database for Cucumis melo microsatellite markers and other horticulture crop research. PLoS One 10(4): e0118630.
  4. Laxman, N., Anuj, K., Vimala, Y. and Gajula, MNV. P. (2016). Sequence to Structure Analysis of DOPA Protein from Mucuna pruriens: A Computational Biology Approach. International Journal of Emerging Trends & Technology in Computer Science 2(8): 3083-3089.
  5. Ramprasad, E., Durga Rani, Ch. V., Vanisri, S. and Gajula, MNV. P. (2016). In Silico Analysis of Chalcone Synthase 1 Protein Sequences from Different Plant Species. International Journal of Science, Environment and Technology 5(4): 1968–1979.
  6. Gajula, MNV. P., Steinhoff, H. J., Kumar, A., Ananda Kumar, P., Siddiq,  E. A. Lendzian, F. (2015). Displacement of the Tyrosyl Radical in RNR Enzyme: A Sophisticated Computational Approach to Analyze Experimental Data. Int. Conf. on Bioinformatics and Computational Biology (BICOB–2015) 7: 211-219.
  7. Gajula, MNV. P. (2014). Role of Magnetic Resonance methods in modern biology: A computational biology perspective. In: Rao, A. R. (ed). Bioinformatics and Computational Biology 6, Studium Press LLC.
  8. Gajula, MNV. P., Desai, S. and Rai, A. (2014). Implementation of multi omics platform on a national grid for Bioinformatics. BIOINFO Computer Engineering 6(1): 515-518.
  9. Gajula, MNV. P., Soni, G., Vanisree, S. and Dastagiri, M. B. (2014). Outlook on Application of Bioinformatics in Agriculture. World Research Journal of Bioinformatics 2(1): 33-44.
  10. Gajula, MNV. P. and Jauhari, N. (2014). A quick reference guide on the application of molecular dynamics simulations to study protein dynamics. Journal of Computational Simulation and Modeling 1(6): 21-27.
  11. Gajula, MNV. P. (2013). Microarray data exchange: An initiative. LAP LAMBERT Academic Publishing, Germany.
  12. Dastagiri, M. B., Gajula, MNV. P., Immanuelraj, T. K. and IPatil, G. (2014). World and Indian agriculture: revolutions & multi speed strategies for future. Science Discovery 2(1): 14-26.
  13. Gajula, MNV. P., Vogel, K. P., Rai, A., Dietrich, F. and Steinhoff, H. J. (2013). How far in-silico computing meets real experiments. A study on the structure and dynamics of spin labeled vinculin tail protein by molecular dynamics simulations and EPR spectroscopy. BMC Genomics 14(S2):S4: 1-11.
  14. Gajula, MNV, P., Soni, G., Babu, G. and Bharadwaj, N. (2013). Molecular interaction studies of shrimp antiviral protein, PmAV with WSSV RING finger domain in-silico. Journal of Applied Bioinformatics & Computational Biology 2(1).
  15. Dastagiri, M. B., Gajula, MNV. P., Prasanna, P. A. L. and Immanuelraj, T. K. (2013). Global Agricultural Policies: Reforms and Future Agriculture. Agriculture, Forestry& Fisheries (Science PG) 2(1): 11-22.
  16. Kumar, A., Mishra, D. C., Rai, A., Sharma, M. K. and Gajula, MNV. P. (2013). In silico analysis of protein protein interaction between resistance and virulence protein during leaf rust disease in wheat (Triticum aestivum L.). World Research Journal of Peptide and Protein 2(1): 52-58.
  17. Rathore, M., Gajula, MNV. P., Sharma, K. and Sharma, N. (2013). Determination of physical existence of Bacterial Lipase Coding Gene for stable expression. World Research Journal of Cell Biology 1(2): 19-21.
  18. Gajula, MNV. P. and Rai, A. (2012). Its time to integrate multi ‘omics’ data to understand the real biology. Int. J. Systems Algorithms and Applications 2: 31-34.
  19. Abe, C., Dietrich, F., Gajula, P., Benz, M., Vogel, K. P., van Gastel, M., Illenberger, S., Ziegler, W. H. and Steinhoff, H. J. (2011). Monomeric and dimeric conformation of the vinculin tail five-helix bundle in solution studied by EPR spectroscopy. Biophys J 101(7): 1772-1780.
  20. Gajula, P., Milikisyants, S., Steinhoff, H. J. and Huber, M. (2007). A Short Note on Orientation selection in the DEER experiments on a native cofactor and a spin label in the reaction centre of Rhodobacter sphaeroides. Springer - Applied Magnetic Resonance (AMR) 31: 1-2.
  21. Gajula, P., Borovykh, I. V., Beier, C., Shkuropatova, T., Gast, P. and Steinhoff, H. J. (2007). Spin-labeled photosynthetic reaction centers from Rhodobacter sphaeroides studied by electron paramagnetic resonance spectroscopy and molecular dynamics simulations. Springer- Applied Magnetic Resonance(AMR) 31: 167-178. 
  22. Borovykh, I. V., Ceola, S., Gajula, P., Gast, P., Steinhoff, H. J. and Huber, M. (2006). Distance between a native cofactor and a spin label in the reaction centre of Rhodobacter sphaeroides by a two-frequency pulsed electron paramagnetic resonance method and molecular dynamics simulations. J Magn Reson 180(2): 178-185.
1 Protocol published
Protocol for Molecular Dynamics Simulations of Proteins
Authors:  MNV Prasad Gajula, Anuj Kumar and Johny Ijaq, date: 12/05/2016, view: 2875, Q&A: 0
Molecular dynamics (MD) simulations have become one of the most important tools in understanding the behavior of bio-molecules on nanosecond to microsecond time scales. In this protocol, we provide a general approach and standard setup protocol for ...