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Aksiniya Asenova UC DAVIS
10 protocols

Alba Blesa Department of Molecular Biology, Centro de Biología Molecular Severo Ochoa, Universidad Autónoma de Madrid - Consejo Superior de Investigaciones Científicas, Spain
1 protocol

Alexander Westbye Department of Marine Microbiology and Biogeochemistry, NIOZ Royal Netherlands Institute for Sea Research, Netherlands
5 protocols

Amit Dey Regional Centre for Biotechnology, 3rd Milestone, Faridabad-Gurgaon Expressway, Faridabad, Haryana 121001
8 protocols

Valentine V Trotter
  • Post-Doc, Environmental Genomics and Systems Biology Division - Lawrence Berkeley National Laboratory
Research focus
  • Microbiology
  • Functional Genomics
Contributions
  • 3 Reviewer merit
  • 41 Editor merit

Education

PhD Molecular Microbiology and Biotechnology, Aix-Marseille Universite

Lab information

Gareth Butland Lab

Publications

- Bacterial Interactomes: Interacting Protein Partners Share Similar Function and Are Validated in Independent Assays More Frequently Than Previously Reported. Shatsky M, Allen S, Gold BL, Liu NL, Juba TR, Reveco SA, Elias DA, Prathapam R, He J, Yang W, Szakal ED, Liu H, Singer ME, Geller JT, Lam BR, Saini A, Trotter VV, Hall SC, Fisher SJ, Brenner SE, Chhabra SR, Hazen TC, Wall JD, Witkowska HE, Biggin MD, Chandonia JM, Butland G. Mol Cell Proteomics. 15(5):1539-55.

- Korte, H. L., Saini, A., Trotter, V. V., Butland, G. P., Arkin, A. P. and Wall, J. D. (2015). Independence of nitrate and nitrite inhibition of Desulfovibrio vulgaris hildenborough and use of nitrite as a substrate for growth. Environ Sci Technol. 49(2):924-31

- Ferdinand, P. H., Borne, R., Trotter, V., Pages, S., Tardif, C., Fierobe, H. P. and Perret, S. (2013). Are cellulosome scaffolding protein CipC and CBM3-containing protein HycP, involved in adherence of Clostridium cellulolyticum to cellulose? PLoS One 8(7): e69360.

- Celik, H., Blouzard, J. C., Voigt, B., Becher, D., Trotter, V., Fierobe, H. P., Tardif, C., Pages, S. and de Philip, P. (2013). A two-component system (XydS/R) controls the expression of genes encoding CBM6-containing proteins in response to straw in Clostridium cellulolyticum. PLoS One 8(2): e56063.

- Fendri, I., Abdou, L., Trotter, V., Dedieu, L., Maamar, H., Minton, N. P. and Tardif, C. (2013). Regulation of cel genes of C. cellulolyticum: identification of GlyR2, a transcriptional regulator regulating cel5D gene expression. PLoS One 8(1): e44708.

- Trotter, V., Vinella, D., Loiseau, L., Ollagnier de Choudens, S., Fontecave, M. and Barras, F. (2009). The CsdA cysteine desulphurase promotes Fe/S biogenesis by recruiting Suf components and participates to a new sulphur transfer pathway by recruiting CsdL (ex-YgdL), a ubiquitin-modifying-like protein. Mol Microbiol 74(6): 1527-1542.

3 Protocols reviewed
Assessment of Brown Adipocyte Thermogenic Function by High-throughput Respirometry
Authors:  Kiana Mahdaviani, Ilan Benador and Orian Shirihai, date: 11/05/2015, view: 3779, Q&A: 0
Brown adipose tissue (BAT) has the unique ability to dramatically increase mitochondrial uncoupled fuel oxidation for thermogenesis in response to adrenergic stimulation. A key parameter in assessing brown adipocyte thermogenic capacity is ...
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13C Kinetic Labeling and Extraction of Metabolites from Adherent Mammalian Cells
Authors:  Parul Mehrotra, Najmuddin Saquib and Kanury V. S. Rao, date: 04/20/2015, view: 3052, Q&A: 0
Fluctuations in metabolite levels in mammalian cells are the most direct form of readout of the cellular metabolic state. The current protocol describes a method for pulse labeling and subsequent isolation of metabolites from adherent mammalian ...
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41 Protocols edited
Product Analysis of Starch Active Enzymes by TLC
Authors:  Darrell Cockburn and Nicole Koropatkin, date: 10/20/2015, view: 2862, Q&A: 0
Thin layer chromatography (TLC) is a useful technique for detecting the presence of monosaccharides through to oligosaccharides, though it needs to be optimized for the specific sugars that are analyzed. Here we present a method for visualizing the ...
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Bacterial Porphyrin Extraction and Quantification by LC/MS/MS Analysis
Authors:  Stefano Mancini and James A. Imlay, date: 10/05/2015, view: 2608, Q&A: 0
Heme is an iron-containing porphyrin which acts as a prosthetic group in several enzymes involved in disparate functions, such as respiration and H2O2-scavenging. Escherichia coli is able to produce heme endogenously ...
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